RetrogeneDB ID:

retro_tsyr_730

Retrocopy
location
Organism:Tarsier (Tarsius syrichta)
Coordinates:scaffold_18397:8939..9348(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RSU1
Ensembl ID:ENSTSYG00000002386
Aliases:None
Description:Ras suppressor protein 1 [Source:HGNC Symbol;Acc:10464]


Retrocopy-Parental alignment summary:






>retro_tsyr_730
CTAAGTAACAACAGTTTTGAAATCCTACCACTAGATATTGGGAAGCTCACAAAGTTGCAGACACTGAGTCTTGGGAATGA
TGGCATGATCTCACTGCCTAAGGAAATCGTGGTGCTTACCCAGCTCAAGGAACTCTACACTCAAGGGAACCACTTGATCA
TTCTGTCCCCAGAACTAGGAAACTTGAATTTAACTTACCAGAACCGGGTATTCAAGGAAGCAAACAATCTCTGGGTTATC
CCAATGCTGATCAGTTTCCGCTCAGCATCTCTTTTGTTTTTTAATATATCTATTCTGAGTCATACAAGTACCTCTACACA
GAAACATGAAGGTAAATGTGGAACCACCAAAGAAGAACAATGACAAATAGAGAAAGATCAGCAGGAAACCCCTGACAACC
AAGAACAAA

ORF - retro_tsyr_730 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 69.06 %
Parental protein coverage: 57.08 %
Number of stop codons detected: 2
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalLSDNDFEILPPDIGKLTKLQILSLRDNDLISLPKEIGELTQLKELHIQGNRLTVLPPELGNLDLTGQKQV
LS.N.FEILP.DIGKLTKLQ.LSL.....ISLPKEI..LTQLKEL..QGN.L..L.PELGNL.LT.Q..V
RetrocopyLSNNSFEILPLDIGKLTKLQTLSLGNDGMISLPKEIVVLTQLKELYTQGNHLIILSPELGNLNLTYQNRV
ParentalFKAENNPWVTPI-ADQFQLGVSHVFEYIRSETYKYLY-GRHMQANPEPPKKNNDKSKKISRKPLTAKNK
FK..NN.WV.P..ADQF.L..S.VF.YI.SE.YKYLY..R.M..N.EPPKKNNDK..KISRKPLT.KNK
RetrocopyFKEANNLWVIPM<ADQFPLSISFVF*YIYSESYKYLY<HRNMKVNVEPPKKNNDK*RKISRKPLTTKNK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Tarsius syrichta was not studied using RNA-Seq expression data.