RetrogeneDB ID: retro_tsyr_656

Retrocopy location

• Organism: Tarsier (Tarsius syrichta)
• Coordinates: scaffold_161906:2922..3626(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: OSGEPL1
• Ensembl ID: ENSTSYG00000011794
• Aliases: None
• Description: O-sialoglycoprotein endopeptidase-like 1 [Source:HGNC Symbol;Acc:23075]

Sequence

>retro_tsyr_656
ATGCTAATATTGAATAAGACATCAGGAGTTGTTTTTAAAACATCAAAAAAGAAAGTTAAAGAATTTTTACAAAGCTTTAA
GTTTCATCCTGGAACACGATTTTTTCATAAAATAGTATTGGGAATTGAAACCAGTTGTGATGATACAGCAGCTGCTATGG
TGGATACAACAGAAAATGTGGTGGAAGAAGCAATACATTCCCAAAATGAAGTTCATTTAAAACAGGTGGGATTATTCCTC
CAGTAGCTCAGCAGCTTCACAGAGAAAAAATCCAGCACATAGTGCAAGAAACTCTTTCTGCCAATGGAGCTCTCCAAATG
AACTATTCAGCGATTGCAACTCTCATCAAATCAGGGCTTGCATTAAGCTTGGGAGTAGGCTTGTCATTTAGCTTACAGCT
AAAAAAGCCATTCATTCCCATTCATTATGTGGATGCTTACGCACTTACTATTAGGTTGACCAATAAAGTAGAATTTCCTT
TTTAAGTTCTTTTGATTTCTGGAGGTCATTGTCTATTGGCATTCGTTCAAGGAGTTTCAAATTTTCTGCTTCTTGGCAAG
TCTTTGGACATAGTACTAGGTGACATGCTTGACAAGGTGACAAGAAGACTTTCTTTAATAAAACATCCAGAGTGTTCCAC
CATGAGTGATGGGAAAGCTATCGAACATCTGGTCAAACAAGGAAATCCATTTCATTTTGAAATG

Alignment

ORF - retro_tsyr_656 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 80.42 %
• Parental protein coverage: 54.82 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MLILNKTAGVVFKTSKRKVHEFLQSFNFHPGTQFFHKIVLGIETSCDDTAAAVVDETGNVLGEAIHSQTQ
          MLILNKT.GVVFKTSK.KV.EFLQSF.FHPGT.FFHKIVLGIETSCDDTAAA.VD.T.NV..EAIHSQ..
Retrocopy MLILNKTSGVVFKTSKKKVKEFLQSFKFHPGTRFFHKIVLGIETSCDDTAAAMVDTTENVVEEAIHSQNE

Parental  VHLK-TGGIIPPVAQQLHRENIQRIVQEALSASRVSPGELSAIATTTKPGLALSLGVGLSFSLQLVDQLK
          VHLK.TGGIIPPVAQQLHRE.IQ.IVQE.LSA........SAIAT..K.GLALSLGVGLSFSL....QLK
Retrocopy VHLK<TGGIIPPVAQQLHREKIQHIVQETLSANGALQMNYSAIATLIKSGLALSLGVGLSFSL----QLK

Parental  KPFIPIHHMEAHALTIRLTNKVEFPFLVLLISGGHCLLALVQGVSDFLLLGKSLDIAPGDMLDKVARRLS
          KPFIPIH...A.ALTIRLTNKVEFPF.VLLISGGHCLLA.VQGVS.FLLLGKSLDI..GDMLDKV.RRLS
Retrocopy KPFIPIHYVDAYALTIRLTNKVEFPF*VLLISGGHCLLAFVQGVSNFLLLGKSLDIVLGDMLDKVTRRLS

Parental  LTKHPECSTMSGGKAIEHLAKQGNPFNFDI
          L.KHPECSTMS.GKAIEHL.KQGNPF.F..
Retrocopy LIKHPECSTMSDGKAIEHLVKQGNPFHFEM

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tarsius syrichta was not studied using RNA-Seq expression data.

ChIP-Seq

Tarsius syrichta was not studied using ChIP-Seq data.

EST

Tarsius syrichta was not studied using EST data.

TSS

Tarsius syrichta was not studied using FANTOM5 data.

Lab

retro_tsyr_656 was not experimentally validated.

Homology

Retrocopy orthology:

Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Tarsius syrichta	ENSTSYG00000011794	1 retrocopy	retro_tsyr_656 ,