RetrogeneDB ID: retro_tsyr_554

Retrocopy location

• Organism: Tarsier (Tarsius syrichta)
• Coordinates: scaffold_139377:3997..5210(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ACSL5
• Ensembl ID: ENSTSYG00000009648
• Aliases: None
• Description: acyl-CoA synthetase long-chain family member 5 [Source:HGNC Symbol;Acc:16526]

Sequence

>retro_tsyr_554
GATAATGGCCCTTGTTCAGGCTCTCGGAAACCAGACCGATTCTATGAATGGCTTTCATACAAACAGGTTGCAGAGCGCTC
CGAGTACATAGGTTCAGCGCTGATCCAGAAGGGCTTCAAGGCCGCCCCGGATCAGTTCATTGGCATCTTTGCTCAAAATA
GACCTGAGTGGGTGATTATTGAACAGGGATGCTTTGCTTATTCAATGGTGGTCGTTCCACTGTATGATACTCTAGGGACC
GAAGCTATCACGTACATAGTCAACAAAGCTGAGCTCTCTCTGATTTTTTGTTGACAGACCAGAGAAGGCCAAACTCTTAT
TAGAGGGTGTAGAAAATAAGTTAACACCAGGCCTTAAAGTCGTAGTTCTCATGGATGCCTACAGCAGTGAGCTGGTGGAA
CGAGGCAAGAAGACTGGGGTGGAGATCATCAGCATGAAGGCGTTGGAGGATCTGGGAAGAGCCAACAGGCGGCAGCCCAA
GCCTCCAGCACCTGAAGATCTTGCAGTAGTTTCTTTCACAAGTGGAACTACAGGCAACCTCAAAGGAGCACTGATCACTC
ATTGAAATGTAGTGAGCGATTGTTCAGCTTTTGTGAAAAAGACAGAGAACACAGTCAGTCCTTCCCCAGACGATACTTTG
ATATCTTTCTTGCCTCTCGCCCATATGTTTGAGAGAGTTGTAGAGTGTGTCATGCTGTGTCATGGAGTTAAAATAGGATT
TTTTCAAGGAGACATCAGGCTGCTTATGGATGATCTCAAGGTGTTGCAGCCCACTCTCTTTCCTGTGGTTCTGAGACTGC
TGAACCCGGTGTTTGACCAAATTTTTGGTCAAGCAAACACCACGCTGAAACGATGGCTCTTGGACTTTGCCTCCAAGAGG
AAAGAAGCAGAACTTCGCAGTGGCATCATTCGAAACAACAGCCTGTGGGACAAGCTGATCTTCCACAAGATACAGTCGAG
CCTAGGCGGAAGTGTCCGGTTGATGGTCACGGGAGCTGCACCCATGTCTGCCACTGTGCTGACCTTCCTGAGAGCGGCCC
TTGGCTGTCAGTTTTATGAAGGTTATGGACAGACTGAGTGCACTGCTGGGTGCTGCCTGACTGTGCCTGGAGACTGGACA
GCAGGCCATGTTGGTGCCCCAATGCCTTGCAATTTTATAAAACTTGTTGATGTGGAAGAAATGAATTACATGGCTGCCAA
GGGCGAAGGTGAG

Alignment

ORF - retro_tsyr_554 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 61.98 %
• Parental protein coverage: 57.39 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  DNGPCLGYRKPNQPYRWLSYKQVSDRAEYLGSCLLHKGYKPSPDQFVGIFAQNRPEWIISELACYTYSMV
          DNGPC.G.RKP...Y.WLSYKQV..R.EY.GS.L..KG.K..PDQF.GIFAQNRPEW.I.E..C..YSMV
Retrocopy DNGPCSGSRKPDRFYEWLSYKQVAERSEYIGSALIQKGFKAAPDQFIGIFAQNRPEWVIIEQGCFAYSMV

Parental  AVPLYDTLGAEAIIYIVNKADITTVIC-DTPQKALVLIGNVEKGLTPGLKMVILMDTFDDDLRQRGEQSG
          .VPLYDTLG.EAI.YIVNKA......C.D.P.KA..L...VE..LTPGLK.V.LMD.....L..RG...G
Retrocopy VVPLYDTLGTEAITYIVNKAELSLIFC>DRPEKAKLLLEGVENKLTPGLKVVVLMDAYSSELVERGKKTG

Parental  VEILSLFDAENLGKENFRKPLPPNPEDLSIICFTSGTTGDPKGAMLTHQNIVSNAAAFLKCVEHTFEPTP
          VEI.S....E.LG..N.R.P.PP.PEDL....FTSGTTG..KGA..TH.N.VS...AF.K..E.T..P.P
Retrocopy VEIISMKALEDLGRANRRQPKPPAPEDLAVVSFTSGTTGNLKGALITH*NVVSDCSAFVKKTENTVSPSP

Parental  DDVTISYLPLAHMFERVVQAVVYSCGARVGFFQGDIRLLPDDMKTLKPTVFPTVPRLLNRVYDKVQNEAK
          DD..IS.LPLAHMFERVV..V....G...GFFQGDIRLL.DD.K.L.PT.FP.V.RLLN.V.D.....A.
Retrocopy DDTLISFLPLAHMFERVVECVMLCHGVKIGFFQGDIRLLMDDLKVLQPTLFPVVLRLLNPVFDQIFGQAN

Parental  TPLKKFLLNLAVSSKYKEVQRGIIRRDSFWDKLIFAKIQASLGGKVRFMVTGAAPISTPVLTFLRAAMGC
          T.LK..LL..A...K..E...GIIR..S.WDKLIF.KIQ.SLGG.VR.MVTGAAP.S..VLTFLRAA.GC
Retrocopy TTLKRWLLDFASKRKEAELRSGIIRNNSLWDKLIFHKIQSSLGGSVRLMVTGAAPMSATVLTFLRAALGC

Parental  QVYEAYGQTECTAGCTITSPGDWTTGHVGAPLACNYVKLEDVADMNYFSANNEGE
          Q.YE.YGQTECTAGC..T.PGDWT.GHVGAP..CN..KL.DV..MNY..A..EGE
Retrocopy QFYEGYGQTECTAGCCLTVPGDWTAGHVGAPMPCNFIKLVDVEEMNYMAAKGEGE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tarsius syrichta was not studied using RNA-Seq expression data.

ChIP-Seq

Tarsius syrichta was not studied using ChIP-Seq data.

EST

Tarsius syrichta was not studied using EST data.

TSS

Tarsius syrichta was not studied using FANTOM5 data.

Lab

retro_tsyr_554 was not experimentally validated.

Homology

Retrocopy orthology:

Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Tarsius syrichta	ENSTSYG00000009648	1 retrocopy	retro_tsyr_554 ,