RetrogeneDB ID: retro_tsyr_407

Retrocopy location

• Organism: Tarsier (Tarsius syrichta)
• Coordinates: scaffold_111367:4489..4885(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: WASF3
• Ensembl ID: ENSTSYG00000005184
• Aliases: None
• Description: WAS protein family, member 3 [Source:HGNC Symbol;Acc:12734]

Sequence

>retro_tsyr_407
ATCAACATGAGAAAGACTCTCAGAGGGTCCACAGTCCAAGACCAGCAGATGGAGTTAAAAACAGCATTCCTAGTCCTGCT
GCTGACATTTAACCAGTGATGGATCACCTCCTCTAAATATCCTGACACCACACTTCATGACAAAGATGAGATGAAGTTCT
GGGCCGATCTTTCCTATTTCTTTGATGTCTGGAAAGAACAAATGCTACAGGACATGGAAGACAAAAGGAAAGAGAAAAAA
CATCAACAGGAACAAAAGCATACAGATAGCATCACCTGCAACATGAAAGGAGTTAAAAAAGACAGAAACAGGTGCCAGGA
ATGGAATGTGATGGCATGTGACAACGAGCTTAGACCTGACAACAAGGTGTCTCGGAGTGTACTATGGAGCACCTCC

Alignment

ORF - retro_tsyr_407 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 59.42 %
• Parental protein coverage: 51.33 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  INMKKAFKSSTVQDQQVV-SKNSIPNPVADI-YNQSDKPPPLNILTPY-RDDKKDGLKFYTDPSYFFDLW
          INM.K....STVQDQQ....KNSIP.P.ADI.......PP.LNILTP....DK.D..KF..D.SYFFD.W
Retrocopy INMRKTLRGSTVQDQQME<VKNSIPSPAADI<LTSDGSPP-LNILTPH<LHDK-DEMKFWADLSYFFDVW

Parental  KEKMLQDTEDKRKEKRRQKEQKRIDGTTREVKKVRKARNRRQEWNMMAYDKELRPDNRLSQSVYHGAS
          KE.MLQD.EDKRKEK..Q.EQK..D..T...K.V.K.RNR.QEWN.MA.D.ELRPDN..S.SV....S
Retrocopy KEQMLQDMEDKRKEKKHQQEQKHTDSITCNMKGVKKDRNRCQEWNVMACDNELRPDNKVSRSVLWSTS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tarsius syrichta was not studied using RNA-Seq expression data.

ChIP-Seq

Tarsius syrichta was not studied using ChIP-Seq data.

EST

Tarsius syrichta was not studied using EST data.

TSS

Tarsius syrichta was not studied using FANTOM5 data.

Lab

retro_tsyr_407 was not experimentally validated.

Homology

Retrocopy orthology:

Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Homo sapiens	ENSG00000132970	1 retrocopy	retro_hsap_3574,
Gorilla gorilla	ENSGGOG00000012518	1 retrocopy	retro_ggor_2411,
Tarsius syrichta	ENSTSYG00000005184	3 retrocopies	retro_tsyr_1561, retro_tsyr_366, retro_tsyr_407 ,