RetrogeneDB ID:

retro_tsyr_349

Retrocopy
location
Organism:Tarsier (Tarsius syrichta)
Coordinates:scaffold_102:63780..64192(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPS2
Ensembl ID:ENSTSYG00000013466
Aliases:None
Description:ribosomal protein S2 [Source:HGNC Symbol;Acc:10404]


Retrocopy-Parental alignment summary:






>retro_tsyr_349
CTGGTCAAGGACACGAAGATCAAGTCACTGGAGGAGATCTGTCTCTTCTTCCTGCTCATCTAGGAGTCTGAGATCATTGA
GTCCTTTCTAAGAGCATGTCTGAAGGATGAGACCTTGAAGATGATGTCATTGCAAAAGCAGACCCGCGCTGGCCCGGGGA
CCAGGTTCAAGGCATTGGTTGCCATGGGGGACTACAATGGCCACATTGGTCTGAGTGTGAAGTGCTCCAAGGGAGTAGCC
ACTACCATCCCAGGGACCATGATCTTGGTCAAGATCCTCTATGTTCCTGTGCGGAGAATCTACTTGGGGACAAGATGGGC
AAGCCCCACACCATCCCTTGCAAGGGACCGGCTGCTGCACCTATGTGAAGGTGCACCTTATCCCTGCCCACTGAGGCACT
GGCATCGTCTCG

ORF - retro_tsyr_349 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 67.86 %
Parental protein coverage: 61.33 %
Number of stop codons detected: 2
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalLVKDMKIKSLEENYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVG
LVKD.KIKSLEE..LF.L.I.ESEII..FL.A.LKDE.LK.M..QKQTRAG..TRFKA.VA.GDYNGH.G
RetrocopyLVKDTKIKSLEEICLFFLLI*ESEIIESFLRACLKDETLKMMSLQKQTRAGPGTRFKALVAMGDYNGHIG
ParentalLGVKCSKEVATAIRGAIILAKLSIVPVRRGY-WGNKIGKPHNSPCK-VTGRCGSVLVRLIPAPRGTGIVS
L.VKCSK.VAT.I.G..IL.K...VPVRR.Y..G.K.GKPH..PCK..TG.C..V.V.LIPA..GTGIVS
RetrocopyLSVKCSKGVATTIPGTMILVKILYVPVRRIY<LGDKMGKPHTIPCK<GTGCCTYVKVHLIPAH*GTGIVS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Tarsius syrichta was not studied using RNA-Seq expression data.