RetrogeneDB ID: retro_tsyr_31

Retrocopy location

• Organism: Tarsier (Tarsius syrichta)
• Coordinates: scaffold_319679:576..1488(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSTSYG00000002173
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: OR4X1
• Ensembl ID: ENSTSYG00000001420
• Aliases: None
• Description: olfactory receptor, family 4, subfamily X, member 1 [Source:HGNC Symbol;Acc:14854]

Sequence

>retro_tsyr_31
ATGACTGAATTTATTTTTCTGGGACTCTTTCCCAACCAGAAGGTGCAGAGAGTTTGCTTCGTGATATTTCTGCTCTTGTA
CACAGCGACTGTCCTGGGGAATTTCCTCATTGTGATCACTGTCATGACCAGCAGGAGTCTTGGTTCCCCCATGTACTTCT
TCCTCAGCTACCTGTCCTTTGTGGAGATCTGTTATTCTTCCACTACAGCCCCCAAACTCATTTCAGATCTGCTGACTGAA
AGGAAAACCATATCTCTGTGGGGCTGCATGAGTCAGTGTTTCTTCATGCACTTCTTGGGTGGCACTGAGATTTTCCTGCT
CACTGTCATGGCCTATGACCGCTATGTGGCCATCTGCAAGCCTCTCAACTACACCACCATCATGAATCGGCAGGTGTGTG
CTGTCCTCGTAGGCATAGCATGGGTGGGAGGCTTTGTGCATTCCTTTGCCCAAATCCTTCTTGTCTTCCAATTGCCCTTC
TGTGGCCCCAATGTGATCAACCACTACTTCTGTGACCTGCTTCCCCTTCTCAAACTTGCCTGCTCTGACACCTTGCTCAC
TGGTCTGCTGATCGTTGCCAATGGGGGAACCCTGTCAGTGATCAGCTTTGGTGTCCTTTTAGTATCCTATGTGGTCATCC
TGCTCCATCTGAGGACTCGGAACTCTGAGGGTTGGCACAAAGCTCTCTCCACCTGTGGGTCCCATGTCACCATGGTTGTC
TTGTTTTTTGGGCCCTGCATCTTCATCTATCTGAGGCCTTCTACCAATCTGCCTGTAGACAAGATGGTGGCTGTGTTTTA
CACAGTGATAACCCCACTCCTCAACCCTGTCATCTATTCCCTGAGAAATGCTGAAATGAAGAAGGCCATGAAGAAGCTAT
GGATCAGGACAATGAAACTAAATAAGAAATAG

Alignment

ORF - retro_tsyr_31 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 64.34 %
• Parental protein coverage: 93.94 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MTEIIFLGFSQNQDVQKVTSVTFLLMYSAIVLGNGLIVVAIMASKGLSSPMYFFLSYLSFVEVCYCSVTA
          MTE.IFLG...NQ.VQ.V..V.FLL.Y.A.VLGN.LIV...M.S..L.SPMYFFLSYLSFVE.CY.S.TA
Retrocopy MTEFIFLGLFPNQKVQRVCFVIFLLLYTATVLGNFLIVITVMTSRSLGSPMYFFLSYLSFVEICYSSTTA

Parental  PKFIFDTFIEKKVISLKACITQIFFLHFF-GTEIFLLTVMAYDCYVAICKPLHYTAIMN-QLRGLLVGVA
          PK.I.D...E.K.ISL..C..Q.FF.HF..GTEIFLLTVMAYD.YVAICKPL.YT.IMN.Q....LVG.A
Retrocopy PKLISDLLTERKTISLWGCMSQCFFMHFLGGTEIFLLTVMAYDRYVAICKPLNYTTIMNRQVCAVLVGIA

Parental  WGGVLLHSVGQTFLIFQLPFCG-NIIDHYFCDVHPEPKLACADTFLIGLLIIINGSSILVISFSVLL-SY
          W.G...HS..Q..L.FQLPFCG.N.I.HYFCD..P..KLAC.DT.L.GLLI..NG....VISF.VLL.SY
Retrocopy WVGGFVHSFAQILLVFQLPFCGPNVINHYFCDLLPLLKLACSDTLLTGLLIVANGGTLSVISFGVLLVSY

Parental  LVXXXXXRSHNLEG-HKALSTCASHITVVGLFFTPCSFVYMRPAT-LPADNIVAVFYMVVTPLL-PVIYS
          .V.....R..N.EG.HKALSTC.SH.T.V.LFF.PC.F.Y.RP.T.LP.D..VAVFY.V.TPLL.PVIYS
Retrocopy VVILLHLRTRNSEGWHKALSTCGSHVTMVVLFFGPCIFIYLRPSTNLPVDKMVAVFYTVITPLLNPVIYS

Parental  FRNAEV
          .RNAE.
Retrocopy LRNAEM

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tarsius syrichta was not studied using RNA-Seq expression data.

ChIP-Seq

Tarsius syrichta was not studied using ChIP-Seq data.

EST

Tarsius syrichta was not studied using EST data.

TSS

Tarsius syrichta was not studied using FANTOM5 data.

Lab

retro_tsyr_31 was not experimentally validated.

Homology

Retrocopy orthology:

Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Tarsius syrichta	ENSTSYG00000001420	1 retrocopy	retro_tsyr_31 ,