RetrogeneDB ID: retro_tsyr_255

Retrocopy location

• Organism: Tarsier (Tarsius syrichta)
• Coordinates: GeneScaffold_6483:479223..479582(+)
• Located in intron of: ENSTSYG00000007694

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSTSYG00000001986
• Aliases: None
• Description: None

Sequence

>retro_tsyr_255
CGGTGTCCCAAGGCACTGTTCCAGCCCTTCTTCCTGGGCATGGAATCCTGTGGCATCCACAAGACCACCTTCAACTCCAT
CATGAAGTGTGATGTAGACATCGCGAGGACCTGTACGCTAACACAGTGCTGTCTGGTGACACCACCATGTACCCAGGCAC
TGCTGACAGGATGCAGAAGGAGTTCACTGTCCTGGTGCCCAGCACCATGAAGATCAAGATCACCACTCCCCCTCAGCGCA
AGTACTCCGTGTGGATCAGTGGCTCCATCCTGGCCTCCCTGTCCACCTTCAAGCAGATGTGGATCAGCAAGCAAGAGTAC
AATGAGTCGGGCCCCTCCATCATCCACTGCAAATGCTTC

Alignment

ORF - retro_tsyr_255 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 85.12 %
• Parental protein coverage: 63.16 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  RCPEALFQPSFLGMESCGIHETTFNSIMKCDVDI-RKDLYANTVLSGGTTMYPGIADRMQKEITALAPST
          RCP.ALFQP.FLGMESCGIH.TTFNSIMKCDVDI.R.DLYANTVLSG.TTMYPG.ADRMQKE.T.L.PST
Retrocopy RCPKALFQPFFLGMESCGIHKTTFNSIMKCDVDI<REDLYANTVLSGDTTMYPGTADRMQKEFTVLVPST

Parental  MKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
          MKIKI..PP.RKYSVWI.GSILASLSTF.QMWISKQEY.ESGPSI.H.KCF
Retrocopy MKIKITTPPQRKYSVWISGSILASLSTFKQMWISKQEYNESGPSIIHCKCF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tarsius syrichta was not studied using RNA-Seq expression data.

ChIP-Seq

Tarsius syrichta was not studied using ChIP-Seq data.

EST

Tarsius syrichta was not studied using EST data.

TSS

Tarsius syrichta was not studied using FANTOM5 data.

Lab

retro_tsyr_255 was not experimentally validated.

Homology

Retrocopy orthology:

Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Tarsius syrichta	ENSTSYG00000001986	5 retrocopies	retro_tsyr_1110, retro_tsyr_255 , retro_tsyr_279, retro_tsyr_700, retro_tsyr_844,