RetrogeneDB ID:

retro_tsyr_2143

Retrocopy
location
Organism:Tarsier (Tarsius syrichta)
Coordinates:scaffold_95226:5400..5591(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:YPEL2
Ensembl ID:ENSTSYG00000005518
Aliases:None
Description:yippee-like 2 (Drosophila) [Source:HGNC Symbol;Acc:18326]


Retrocopy-Parental alignment summary:






>retro_tsyr_2143
ATGATAAAAATGACAAACTAAAAAACTTTCCCAGGTTCTCTGCCAAGCTGCCACTGATTTTACTGCTATAGCCACTGCAA
AGCTCATTTAGCAGATTATGCTCTGTTGGTCTCAAAGTTTCCTTGTGTTAGTCAAAACCAAGACTACCTCTTTAATTCTG
GGTAAATGTGGACTGTGATCCAACAAAGGAG

ORF - retro_tsyr_2143 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 53.85 %
Parental protein coverage: 71.11 %
Number of stop codons detected: 2
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMVKMTRSKTFQAYLPSCHRTYSCIHCRAHLANHDELISKSFQGSQGRAYLFNS-VVNVGCGPAEE
M.KMT..KTF...LPSCH..Y...HC.AHLA....L.SK....SQ...YLFNS..VNV.C.P..E
RetrocopyMIKMTN*KTFPGSLPSCH*FYCYSHCKAHLADYALLVSKFPCVSQNQDYLFNS<WVNVDCDPTKE

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Tarsius syrichta was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Tarsius syrichta was not studied using ChIP-Seq data.