RetrogeneDB ID: retro_tsyr_2142

Retrocopy location

• Organism: Tarsier (Tarsius syrichta)
• Coordinates: scaffold_95192:4352..5095(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: FBXO15
• Ensembl ID: ENSTSYG00000012653
• Aliases: None
• Description: F-box protein 15 [Source:HGNC Symbol;Acc:13617]

Sequence

>retro_tsyr_2142
CCCCGATGGCGTTCTTTAATTGCCAAGTACAATCTGAGTCTTTTGACTGACTCTGCCATGATTGGCTGCGACAGATTCAT
TCGGATCTGCTGCCTACAGCCTGACCTCCTGGTGGGGCTGTGGAAGGAGGAGGAAGAACTGGGTTTTGTTACGGCAAATC
TTCATTTCTGTCACCTCCTGGAGAGGAGCACATTAGGCTGGGCCACTATTCCCTACAAACTGCCTCCTCACAGCCCCCTT
TTGAATAACAGCCCTGAGTATGGACTGTATGGTTCCCAACTCCACGTGGATCTGCACAGCAGTGGGATTTTCTATCTATG
TGCGGCATTTCGCAATCTCTTCACCACAAAAGGAGACGTTGAAAATGGATATGCGAAACTCACTGCTATAAGTTCTAAAA
ACAACAGCGGCCACCTCCCTCTTGTTGGCAAAACTGGCCTCTTTTGGAGAACTGATGTTATTGATGGCTCTATAAAGAGT
TGTTCCATGATGGACCTCACCCTCTCGAATATGCGCGGGGAACCTTTTTGGCGTTTCAGTTCCCCGGTTTGCATGAGACT
GTCTCCCGCGCCCTCGATGGTCCTCATTTCTTGGGAGAGACATACTGTGCGGACTCCATGGAGGAAGAAGGCAGAGCGCA
CGTGGAGATGGTGTGGGTCAGAGAGACCGAGGAATACTTCGTCGTCAACCTGCTCCTTTACCTTAGTGTAGCAAACGTCA
GCCACTGGTTTGGGACAAACTAC

Alignment

ORF - retro_tsyr_2142 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 81.12 %
• Parental protein coverage: 57.27 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  PRWRSLIAKYNLSLLTDSAMIGCDRLIRICCXXXXXXXXXXXKEEELAFVMANLHFRHLLERSTLGSATI
          PRWRSLIAKYNLSLLTDSAMIGCDR.IRICC............EEEL.FV.ANLHF.HLLERSTLG.ATI
Retrocopy PRWRSLIAKYNLSLLTDSAMIGCDRFIRICCLQPDLLVGLWKEEEELGFVTANLHFCHLLERSTLGWATI

Parental  PYELPPHSPLLNNSPEYGLYGYQLHVDLHSSGIFYLCAAFRNLFTTKGDIENGYAKLIVINSKNNSDHLP
          PY.LPPHSPLLNNSPEYGLYG.QLHVDLHSSGIFYLCAAFRNLFTTKGD.ENGYAKL..I.SKNNS.HLP
Retrocopy PYKLPPHSPLLNNSPEYGLYGSQLHVDLHSSGIFYLCAAFRNLFTTKGDVENGYAKLTAISSKNNSGHLP

Parental  LVGKIGLFWRTNVVDGYIKSCSIMDLTLSDMRREPFWCFSSPVCMKLSAAP-LDGPHFLGETYFVDYMDE
          LVGK.GLFWRT.V.DG.IKSCS.MDLTLS.MR.EPFW.FSSPVCM.LS.AP.LDGPHFLGETY..D.M.E
Retrocopy LVGKTGLFWRTDVIDGSIKSCSMMDLTLSNMRGEPFWRFSSPVCMRLSPAP<LDGPHFLGETYCADSMEE

Parental  EGRVHVEMVWIRETEEYFIVNLVLYLSIAKVNHWFGTEY
          EGR.HVEMVW.RETEEYF.VNL.LYLS.A.V.HWFGT.Y
Retrocopy EGRAHVEMVWVRETEEYFVVNLLLYLSVANVSHWFGTNY

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tarsius syrichta was not studied using RNA-Seq expression data.

ChIP-Seq

Tarsius syrichta was not studied using ChIP-Seq data.

EST

Tarsius syrichta was not studied using EST data.

TSS

Tarsius syrichta was not studied using FANTOM5 data.

Lab

retro_tsyr_2142 was not experimentally validated.

Homology

Retrocopy orthology:

Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000013571	1 retrocopy	retro_amel_1297,
Tarsius syrichta	ENSTSYG00000012653	1 retrocopy	retro_tsyr_2142 ,