RetrogeneDB ID: retro_tsyr_2069

Retrocopy location

• Organism: Tarsier (Tarsius syrichta)
• Coordinates: scaffold_86325:6933..7304(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSTSYG00000005200
• Aliases: None
• Description: None

Sequence

>retro_tsyr_2069
ATGGGGTTCATGCTCATGCTGAACTGGTCACTGCTCTTCATCCAGGTGGCCTTCATCAAGCTGGCCATGCAGCTCGACCC
TATTACCTGGCAGAACTGATAGAAGAATACGCAGTGGCCACCAGTAGGATCATAAAATACACGAGCCGGTTCTCCACAGT
TTTGCAGATTGGCCTCTACGTCTTTGAGCACTTCCCCATCAGCATGATTGGCGTGGGCCTCTTCACCAACCTCGTCTACT
CTGGCCTCCTCCAGACCTTCCCCTTCATCATGCTGACCTCGCCTAACTTCATCCTGTCCAGCGGTCTAGTGGTGGTGAAT
CATTACCTAGCATTTCAGGTTTTTGCAGAAGCATGTTATCCTTTCTCAGAG

Alignment

ORF - retro_tsyr_2069 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 80. %
• Parental protein coverage: 63.27 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MWFMYVLSWLSLFIQVAFITLAV-AAGLYYLAELIEEYTVATSRIIKYMIWFSTAVLIGLYVFERFPTSM
          M.FM..L.W..LFIQVAFI.LA..AA..YYLAELIEEY.VATSRIIKY...FST...IGLYVFE.FP.SM
Retrocopy MGFMLMLNWSLLFIQVAFIKLAM<AARPYYLAELIEEYAVATSRIIKYTSRFSTVLQIGLYVFEHFPISM

Parental  IGVGLFTNLVYFGLLQTFPFIMLTSPNFILSCGLVVVNHYLAFQFFAEEYYPFSE
          IGVGLFTNLVY.GLLQTFPFIMLTSPNFILS.GLVVVNHYLAFQ.FAE..YPFSE
Retrocopy IGVGLFTNLVYSGLLQTFPFIMLTSPNFILSSGLVVVNHYLAFQVFAEACYPFSE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tarsius syrichta was not studied using RNA-Seq expression data.

ChIP-Seq

Tarsius syrichta was not studied using ChIP-Seq data.

EST

Tarsius syrichta was not studied using EST data.

TSS

Tarsius syrichta was not studied using FANTOM5 data.

Lab

retro_tsyr_2069 was not experimentally validated.

Homology

Retrocopy orthology:

Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000007382	1 retrocopy	retro_mluc_581,
Tarsius syrichta	ENSTSYG00000005200	1 retrocopy	retro_tsyr_2069 ,
Tursiops truncatus	ENSTTRG00000012250	1 retrocopy	retro_ttru_111,