RetrogeneDB ID:

retro_tsyr_1988

Retrocopy
location
Organism:Tarsier (Tarsius syrichta)
Coordinates:scaffold_75324:5821..6226(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ATP5C1
Ensembl ID:ENSTSYG00000003035
Aliases:None
Description:ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1 [Source:HGNC Symbol;Acc:833]


Retrocopy-Parental alignment summary:






>retro_tsyr_1988
TTTGAAGACGCATCGGTCATTGCCCTTGAATTGTTAAATTCTGGATATGAGTTTGATGAGGGCTGTATCATCTTTAATTG
ATTTAGGTCTGCCATCTCCTATAAGACAGAAAAAAAGTCCTTTTCCCTTAACACCATTGCAAGCACTGAGAGCATGAATA
TCTACAATGATATTGACACTGATGTGTTACAAAATTACCAAGAATGCAATCTGGCCAACATCATCTACAACTCTTTGAAG
GAGTCTACCAGCCATGAGCAGAGTGCTAGGATGCTGGCCATGGACAATGCCAGCAAGAACGTCTGCCAGATGATTGATAC
ATTGACTTTGACATTCAACTGTACCTAACAAACTGTCATAAGAAAATAGTTGATTGAGATAATCTCCAGTGCTACAGCTC
TGGAA

ORF - retro_tsyr_1988 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 78.68 %
Parental protein coverage: 50.94 %
Number of stop codons detected: 3
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalFGDASVIALELLNSGYEFDEGSIIFNRFRSVISYKTEEKPIFSLNTIAGAESMSIYDDIDADVLQNYQEY
F.DASVIALELLNSGYEFDEG.IIFN.FRS.ISYKTE.K..FSLNTIA..ESM.IY.DID.DVLQNYQE.
RetrocopyFEDASVIALELLNSGYEFDEGCIIFN*FRSAISYKTEKKS-FSLNTIASTESMNIYNDIDTDVLQNYQEC
ParentalNLANIIYYSLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAALD
NLANIIY.SLKEST..EQSARM.AMDNASKN...MID.LTLTFN.T.Q.VI.K.LIEIIS.A.AL.
RetrocopyNLANIIYNSLKESTSHEQSARMLAMDNASKNVCQMIDTLTLTFNCT*QTVIRK*LIEIISSATALE

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Tarsius syrichta was not studied using RNA-Seq expression data.