RetrogeneDB ID: retro_tsyr_1952

Retrocopy location

• Organism: Tarsier (Tarsius syrichta)
• Coordinates: scaffold_71392:6257..6851(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: SRSF11
• Ensembl ID: ENSTSYG00000008728
• Aliases: None
• Description: serine/arginine-rich splicing factor 11 [Source:HGNC Symbol;Acc:10782]

Sequence

>retro_tsyr_1952
GAGTCACCTTTGCCAGTCTCATCTCGTGTCTGCTTTGTTAAGTTCCATGATCCGGACTCAGCAGTTGTGGCACAGTATCT
GACAAACACTGTATTCGTTGACAGAGCTTTGATAGCCGTACCATATGCAGAAGGAGTTATTCCTGATGAGACTAAGGCTT
TGTCTCTGTTGCCACCAGCTAATGCAGTGGCAGGTCTTCTGGCTGGTGGTGGACTCCTGCCTACTCCTAACCCACTTACC
CAGATTGGCGCTGTTCCACCGGCTGCTTTGGGAGCTCCCACTCTTGATCCTGCCCTTGCTGCACTTGGGCTTCCTGGAGC
TAACTTGAACTCTCAGTCTCTTGCTGCAGATCCGTTGCTGAAGCTTATGAGTACTGTTGATCCCAAGTTGAGTCATGTGG
CTGCTGGTCTTGTTTCACCAAGTCTGAAATCGGATACCTCTAGTAAAGAAACAGAGGAAGCTATGGAGAGAGTCCGAGAA
GCACAGTCCCTGATCTCTGCTGCTATAGAACCAGATAAAAAAGAAGAAAAAAGAAGGCAATCAAGATCAAGATCACCTTC
TAGGAGGAGAAGGACTCCCTCATCTTCAAGACAC

Alignment

ORF - retro_tsyr_1952 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 89.39 %
• Parental protein coverage: 51.16 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  DSPLPVSSRVCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAEGVIPDETKALSLLAPANAVAGLLPGG
          .SPLPVSSRVCFVKFHDPDSAVVAQ.LTNTVFVDRALI.VPYAEGVIPDETKALSLL.PANAVAGLL.GG
Retrocopy ESPLPVSSRVCFVKFHDPDSAVVAQYLTNTVFVDRALIAVPYAEGVIPDETKALSLLPPANAVAGLLAGG

Parental  GLLPTPNPLTQIGAVPLAALGAPTLDPALAALGLPGANLNSQXXAADQLLKLMSTVDPKLNHVAAGLVSP
          GLLPTPNPLTQIGAVP.AALGAPTLDPALAALGLPGANLNSQ..AAD.LLKLMSTVDPKL.HVAAGLVSP
Retrocopy GLLPTPNPLTQIGAVPPAALGAPTLDPALAALGLPGANLNSQSLAADPLLKLMSTVDPKLSHVAAGLVSP

Parental  SLKSDTSSKEIEEAMKRVREAQSLISAAIEPDKKEEKRRHSRSRSRSRRRRTPSSSRH
          SLKSDTSSKE.EEAM.RVREAQSLISAAIEPD........SRSRS.SRRRRTPSSSRH
Retrocopy SLKSDTSSKETEEAMERVREAQSLISAAIEPDXXXXXXXQSRSRSPSRRRRTPSSSRH

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tarsius syrichta was not studied using RNA-Seq expression data.

ChIP-Seq

Tarsius syrichta was not studied using ChIP-Seq data.

EST

Tarsius syrichta was not studied using EST data.

TSS

Tarsius syrichta was not studied using FANTOM5 data.

Lab

retro_tsyr_1952 was not experimentally validated.

Homology

Retrocopy orthology:

Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Tarsius syrichta	ENSTSYG00000008728	1 retrocopy	retro_tsyr_1952 ,