RetrogeneDB ID:

retro_tsyr_1817

Retrocopy
location
Organism:Tarsier (Tarsius syrichta)
Coordinates:scaffold_60266:5541..5927(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:OTOR
Ensembl ID:ENSTSYG00000008851
Aliases:None
Description:otoraplin [Source:HGNC Symbol;Acc:8517]


Retrocopy-Parental alignment summary:






>retro_tsyr_1817
ATGGCAAGAAAAATGTTACTTTTCCTCCCGGGCCTTGCAGCCATGTGTGCTGTGCATGGAATATTTATGGACCAACTCTC
TTCCAAGGAGCTCTGGGCAGATGAAAAGTGTGTCTGTACCATTTCTCTGGCTAGTGCCCAAGAAGATTGCAATGCCCCGG
ACTGCAGATTCATTAATGTTAAAAAAAGGGCAGCAGATCTATGTTTACTCAAAGCTGGTAAAAGAAAATTAAACTGGAGG
GAATTGGGGCTGGCAGTGTTTACAGTGACAATCAGGATGAAATGGGCATCGTGGGTTATTTCCCCAGCAACTTAGTAAAG
GAGCAGCGTGTGTACCAGGAAGTCACCAAGGAAGTTTCCACCACAGATATTGACTTCTTCTGTGAG

ORF - retro_tsyr_1817 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 84.62 %
Parental protein coverage: 100. %
Number of stop codons detected: 1
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalMARIMLLFLLGLVAVCAVHGIFMDRLSSKKLCADEECVYTISLANAQEDYNAPDCRFINVKK-GQQIYVY
MAR.MLLFL.GL.A.CAVHGIFMD.LSSK.L.ADE.CV.TISLA.AQED.NAPDCRFINVKK.GQQIYVY
RetrocopyMARKMLLFLPGLAAMCAVHGIFMDQLSSKELWADEKCVCTISLASAQEDCNAPDCRFINVKK>GQQIYVY
ParentalSKLVKENEAGEFW-AGSVYGDNQDEMGIVGYFPSNLVKEQRVYQEATKEVPTTDIDFFCE
SKLVKEN..G..W.AGSVY.DNQDEMGIVGYFPSNLVKEQRVYQE.TKEV.TTDIDFFCE
RetrocopySKLVKEN*TGGNW>AGSVYSDNQDEMGIVGYFPSNLVKEQRVYQEVTKEVSTTDIDFFCE

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Tarsius syrichta was not studied using RNA-Seq expression data.