RetrogeneDB ID: retro_tsyr_1813

Retrocopy location

• Organism: Tarsier (Tarsius syrichta)
• Coordinates: scaffold_599573:253..475(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: HSPB11
• Ensembl ID: ENSTSYG00000012499
• Aliases: None
• Description: heat shock protein family B (small), member 11 [Source:HGNC Symbol;Acc:25019]

Sequence

>retro_tsyr_1813
CAAACCTTGAAGACTGAAAAGAGCACATCTAAAGAGCCAGTTGATTTTGAGCAATGGATTAAAAAAGATTTGGTACACAC
AGAGGGGCAGCTTCAAAATGAAGAAATTGTGGTATGTGATGGCTCTGCCACTTACTTGAGATTCATTTTTATATCAGCCT
TTGATAATTTTGTTTCTGTGCATAGCTTTTATGCAGAGGGAACAGTAATCTCAAATCTTTCT

Alignment

ORF - retro_tsyr_1813 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 75.68 %
• Parental protein coverage: 51.75 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  RTLKIEKSTSKEPVDXXXXXXXXLVHTEGQLQNEEMVVRDGSATYLRFIIISAFDHFASVHSISAEGIVI
          .TLK.EKSTSKEPVD........LVHTEGQLQNEE.VV.DGSATYLRFI.ISAFD.F.SVHS..AEG.VI
Retrocopy QTLKTEKSTSKEPVDFEQWIKKDLVHTEGQLQNEEIVVCDGSATYLRFIFISAFDNFVSVHSFYAEGTVI

Parental  SNLS
          SNLS
Retrocopy SNLS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tarsius syrichta was not studied using RNA-Seq expression data.

ChIP-Seq

Tarsius syrichta was not studied using ChIP-Seq data.

EST

Tarsius syrichta was not studied using EST data.

TSS

Tarsius syrichta was not studied using FANTOM5 data.

Lab

retro_tsyr_1813 was not experimentally validated.

Homology

Retrocopy orthology:

Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000000284	3 retrocopies	retro_dnov_2439, retro_dnov_386, retro_dnov_514,
Rattus norvegicus	ENSRNOG00000010241	2 retrocopies	retro_rnor_849, retro_rnor_850,
Ictidomys tridecemlineatus	ENSSTOG00000002643	1 retrocopy	retro_itri_1217,
Tarsius syrichta	ENSTSYG00000012499	2 retrocopies	retro_tsyr_1813 , retro_tsyr_697,