RetrogeneDB ID: retro_tsyr_1697

Retrocopy location

• Organism: Tarsier (Tarsius syrichta)
• Coordinates: scaffold_54784:3126..3330(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: TMEM65
• Ensembl ID: ENSTSYG00000002828
• Aliases: None
• Description: transmembrane protein 65 [Source:HGNC Symbol;Acc:25203]

Sequence

>retro_tsyr_1697
AAACTGGAAGCTCCACCACCCACCCCGGAACAGGTGAGAGGTGTATTCATCCTCAATGCGATACCTTTCCGAGGGCTTGG
CTTTTTGGATAATGCAATTATGATTGTTGCCTGAATTGAGCTGTCTATTGGAATTATTTGGGGAATTTCAACTATGGCAG
CTGCTGCTTTGGGAAATCTCATGTCACATTTAAATGGACTTGGA

Alignment

ORF - retro_tsyr_1697 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 80. %
• Parental protein coverage: 50.72 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  KLEAPPPTPGQLRYVFIHNAIPFVGFGFLDNAIMIVAGTHIEMSIGIILGISTMAAAALGNLVSDLAGLG
          KLEAPPPTP.Q.R.VFI.NAIPF.G.GFLDNAIMIVA...IE.SIGII.GISTMAAAALGNL.S.L.GLG
Retrocopy KLEAPPPTPEQVRGVFILNAIPFRGLGFLDNAIMIVA--*IELSIGIIWGISTMAAAALGNLMSHLNGLG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tarsius syrichta was not studied using RNA-Seq expression data.

ChIP-Seq

Tarsius syrichta was not studied using ChIP-Seq data.

EST

Tarsius syrichta was not studied using EST data.

TSS

Tarsius syrichta was not studied using FANTOM5 data.

Lab

retro_tsyr_1697 was not experimentally validated.

Homology

Retrocopy orthology:

Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Felis catus	ENSFCAG00000026901	1 retrocopy	retro_fcat_1886,
Tupaia belangeri	ENSTBEG00000000828	1 retrocopy	retro_tbel_662,
Tarsius syrichta	ENSTSYG00000002828	1 retrocopy	retro_tsyr_1697 ,