RetrogeneDB ID:

retro_tsyr_1685

Retrocopy
location
Organism:Tarsier (Tarsius syrichta)
Coordinates:scaffold_542346:199..760(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:NUDT21
Ensembl ID:ENSTSYG00000014602
Aliases:None
Description:nudix (nucleoside diphosphate linked moiety X)-type motif 21 [Source:HGNC Symbol;Acc:13870]


Retrocopy-Parental alignment summary:






>retro_tsyr_1685
TATCCTCTGATAGATTATCCTCTCAGTACAAAAAAACCTCTCTATGAGGACAGCTCTGCTGCAGTCAGATTTCAGCACAT
AAGGGAGAAATTTGATAAAATCGGAATGAGGAGGATCATAGGAGGAGTCCTGATTGTATATGAGCACCGGCTACCCCATG
TGTTATTGCTACAGTTGGGAACAACTTTTCTCAAATTACCTGGTGGTGAACTTAACCCAGAAGAAGATGAAGTGGAAGGA
CTAAAATGCCTGATGACAGAGATACTGGGTCCTCGAGATAGAGTTCTGCAAGATTGGGTCATTGATGACCATGTTGGTAA
CTGATGGAGACTAAATTTTGAACCTCCTCAGGATACATATATTTCTGCACATATTAAGAAGCCTAAGGAGCATAAGCAGT
TGTTTCTGATTCAACTTCAAGAGAAGGTCTTGTTTGCAGTCCCTGAAAATTACAAGCTGGTAGCTGCACCATTGTTTGAG
TCACATGACCATGCACCAGGATGTGGACCCATCATTTCTAGTCTCTCTCAGCTGTTGAGTAGGTCCAATTTTATACACAA
C

ORF - retro_tsyr_1685 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 78.19 %
Parental protein coverage: 100. %
Number of stop codons detected: 1
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGG
YPL..Y...TK.PLYE.DSS.A.RFQ..RE.FDKIGMRR...GVLIV.EHRLPHVLLLQLGTTF.KLPGG
RetrocopyYPLIDYPLSTKKPLYE-DSSAAVRFQHIREKFDKIGMRRIIGGVLIVYEHRLPHVLLLQLGTTFLKLPGG
ParentalELNPGEDEVEGLKRLMTEILGRQDGVLQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQL
ELNP.EDEVEGLK.LMTEILG..D.VLQDWVIDD..GN.WR.NFEPPQ..YI.AHI.KPKEHK.LFL.QL
RetrocopyELNPEEDEVEGLKCLMTEILGPRDRVLQDWVIDDHVGN*WRLNFEPPQDTYISAHIKKPKEHKQLFLIQL
ParentalQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNFIYN
QEK.LFAVP.NYKLVAAPLFE..D.APG.GPIISSL.QLLSR.NFI.N
RetrocopyQEKVLFAVPENYKLVAAPLFESHDHAPGCGPIISSLSQLLSRSNFIHN

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide