RetrogeneDB ID:

retro_tsyr_1655

Retrocopy
location
Organism:Tarsier (Tarsius syrichta)
Coordinates:scaffold_532596:237..417(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:HSBP1
Ensembl ID:ENSTSYG00000006648
Aliases:None
Description:heat shock factor binding protein 1 [Source:HGNC Symbol;Acc:5203]


Retrocopy-Parental alignment summary:






>retro_tsyr_1655
ATGGCCGAGACCAATCCTAAGAATGTGCAGGATCTCACCTTGGTGGTGCATACACTCCTGCAACAGATGCAAGATAAATT
TCAGATCATGTCTGACCAGATCATTGGAAGAATTGATGATATGAGTAGTCACATTGATGATCTGGAGAAAAACATCACGA
ACCTCATGACACAGGCTGGG

ORF - retro_tsyr_1655 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 85.25 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMAETDPKNVQDLTSVVHTLLQQMQDKFQTMSDQIIGRTLDDMSSRIDDVEKNIADLMTQAG
MAET.PKNVQDLT.VVHTLLQQMQDKFQ.MSDQIIGR..DDMSS.IDD.EKNI..LMTQAG
RetrocopyMAETNPKNVQDLTLVVHTLLQQMQDKFQIMSDQIIGR-IDDMSSHIDDLEKNITNLMTQAG

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Tarsius syrichta was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Tarsius syrichta was not studied using ChIP-Seq data.