RetrogeneDB ID: retro_tsyr_1443

Retrocopy location

• Organism: Tarsier (Tarsius syrichta)
• Coordinates: scaffold_442838:916..1192(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSTSYG00000013509
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: C11orf70
• Ensembl ID: ENSTSYG00000000616
• Aliases: None
• Description: chromosome 11 open reading frame 70 [Source:HGNC Symbol;Acc:28188]

Sequence

>retro_tsyr_1443
TGTGATCCATTTCTAATTTCTGATGAGTTATGAAAAGTTTTGCTAGTGGAAGACTTGGAAAAATATGAAGTGTTCAGCCC
AACAGACAGAGAGGAGTTCCTGTTCTGCGTGTTCAAACACCTGTGCCTCGGCAGAGCCCTCTGTCAATATGAAGTCGTGC
TTAGCCCGTATCTGGAAACAGCAATGCTGATCTATAAGGACCTTGTGAGCGTTCGAAAGAATTCTCAAACCAAGAAAATA
CAAATCACCTCTTCTGTCTTTAAAGTTACAGCCTAT

Alignment

ORF - retro_tsyr_1443 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 92.39 %
• Parental protein coverage: 57.14 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  CDPFLISDELRKVLLVEDSEKYEVFSPADREEFLFCVFKHLCLGGALCQYEDVLSPYLETAKLIYKDLVS
          CDPFLISDEL.KVLLVED.EKYEVFSP.DREEFLFCVFKHLCLG.ALCQYE.VLSPYLETA.LIYKDLVS
Retrocopy CDPFLISDEL*KVLLVEDLEKYEVFSPTDREEFLFCVFKHLCLGRALCQYEVVLSPYLETAMLIYKDLVS

Parental  VRKNPQTKKIQITSSVFKVTAY
          VRKN.QTKKIQITSSVFKVTAY
Retrocopy VRKNSQTKKIQITSSVFKVTAY

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tarsius syrichta was not studied using RNA-Seq expression data.

ChIP-Seq

Tarsius syrichta was not studied using ChIP-Seq data.

EST

Tarsius syrichta was not studied using EST data.

TSS

Tarsius syrichta was not studied using FANTOM5 data.

Lab

retro_tsyr_1443 was not experimentally validated.

Homology

Retrocopy orthology:

Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Tarsius syrichta	ENSTSYG00000000616	2 retrocopies	retro_tsyr_1443 , retro_tsyr_470,