RetrogeneDB ID: retro_tsyr_1196

Retrocopy location

• Organism: Tarsier (Tarsius syrichta)
• Coordinates: scaffold_34364:11337..14993(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSTSYG00000001251
• Aliases: None
• Description: None

Sequence

>retro_tsyr_1196
CCTTCAACACCCAGTACTGCTTCAGATTACCTAGATGTATCAACAAGGCCTTCTCTTCATCGGAGCCATCTGAATTTCTC
CATGTTGGAATCCTCTGCCTTACACTCTCAGCCTTCCACATCCTCGGGATTCCCAATTGGCAGTGCAGGATTTTCCCTCG
TAAAAGAAATGAAAGCTTCTACCTCTCAGCATGATGATGGTAACATCTCAACTACCAGTGGCTTTTGTTCAAGAGCTTCT
GGCAAAGATATCGCTGTTTCAAAGAACACATCATTGCCACCTCTCTGGTCCCCAGAAGCTGACCGATCTCATTTCCTCTC
ACAGCACACTGCCACCAGCTCAGAAAAGCCAGCATTCAACTTGTCTGCCTTTGGAACTCTTTCCCCTTCACTTGAGGAGT
CTTTGGTCCTTAAAAGTGGTCAGCTTAGAGATTCTCCATTTTATCCTGGAAAAACAAGGTATGGTTGGGCAGCAGCTGCT
GTAAGACAGCCTGAACTCCGAAATACGCCTTATCAGGCACCAGTCAGAAGACAAATGAAAGCTAAGCAACTCAGTGCACA
GTCTTCCAGTTCAACAGCTCGGCGCATATTGCAGGCTTTAGAGAAGATGTCAAGCCCCTTAGCAGATGCTAAAAGAATTC
CATCTGTTGTTTATTTGAATTCTCCTCTTGATAGGACTGGAATAGATATTACAGATATTCAGGCCAAAAGAACAAAGGTG
GAATCTCAGTATCCCTCTGTTCAGAGACTCATGACCCCAAAGTCAGATTCCATAGCAACAAATCGAATTATTTATTTTAA
GCCATCTCTGACCCCATCTGGTGAATTAAGGAAGATTAATCAAAGAGTAGATCAAAAGCACAGCACTGAATATAAAAAAA
ATATGACACCAGGACAAAACAGAGAACGAGAAAATGGCCTTTCATGCACAACTTCCAGTTTGCCTGCAACCAGTGGTTTA
TCTTCTGGAGGAAGTGGCAAGATGAGAAGAGAGAGAACACCCTCTGTTGCTTCTAAACCTTCAGAGGAAGAGAAAATGGA
AGTACCAGCATTACCGAAAATCTCTCTACCAATCTCTAATTCTTCACTGTCTACCTTCAATCTTAGTTCCCCTGTGATCA
CAGCTTCCTCTCCATCACCTATGAGCCCATCTCAGTCATTAACAAACAAGGTACAAATGACCCCTCCAAGCAGCACTGGC
AGTCCTGTGTTTACATTTTCACCTCCAATTATAAAATCTACTGAGCCATACGTACTACCTCTGTCATCTCCATCATCTAT
GGGATTTACATTTAGTGCTCCAATTGCAAAAACAGCAGAATTTTCTGACTCTAGTTGCACTTTAGAACCAATTGTAAGTA
GTTCAGCTCAAGCTGCCACTGCAATGAATAGTACAGGTTGCAAGAGGATGATAGATGAAGATTGTGAGGGCCCTTTTAGA
CCTGCAAAAACCCTGAAAGAAGGAAGTGTTCTGGATGTTCTGAAAAAGCCTGGTTTTTCATCACCAAAGGCAGACTCTCT
TGCTGCACAGCCTAACACGACAAGCCCAGTAATTTATACAAGACCCGCAACAAGTAGCTTTTCTTCTAGTGGAATCGAGT
TTGGGGGAAGATTAAAAGCTGAATCCTCATGGCAATGCAATACATGTCTACTGCAAACAAAGTTATAGACAATAAGTGCA
TAGCCTGCCAAACAGCAAAAATGCCACCAAGAGATCCTGCTAAACAGACTGGAATTGGGACACCAAGTAAAAGTGACAAG
GCAGCTCTTTCTGCATCAGGGACAGGCTTTGGAGACAAATGTAAACCAGCCATAGGAACTTGGGATTGTGATACCTGCTT
AGTGCAAAATAAACCTGAAGTGATAAAATGTGTAGCCTGTGAAACACTGAAACCTGGAATTTGTGTGAGGCGAGCCCTAA
CTTTGAGAGTAGTTTCCAAAAGTGCTGAGACTATAACTGCTTCCTCTTCCAGCTGCACTGTGACCACTGGTACCTTAGGA
TTTGGAGATAAATCCAACAGGCCTGTGGGATCATGGGAATGTTCAGTATGCTGTGTTTCTAATAACGCAGAAGACAATAA
ATGTGTGTCCTGTATGTCAGAGAAACCAGGAAATTCAGTACCTACTTCAAGAGGCAGCACTGTACCTGTCTCTCTATCAT
CTGGAAGCTGTCTAGGATTAGACAAGTTCAAGAAACCTGAGGGAAGCTGGGACTGTGAAGTGTGCCTAGTGCAGAATAAA
GCAGATTCTACCAAATGTGTAGCATGTGAAAGTGCAAAGCCAGGCACAAAATCCGAGTTTAAAGACTTTTGCACATCTTC
CTCATCTTCGAACCCAGCAGCCTCGTCCTTCAAATTTGGTATCCCATCATCCTCTTCTGGGCCTTCTCAGACTTCAGCAT
GCACTGGAAGTTTTAAATTTAGAGATCAGGGAGGATTTAAAACAGGTGTGCCATCTGATTCTGGGTCTATAAACCCCATG
AGCGAAGGCTTTATATTTTGTAAACCAGTAGGAGATTTTAAATTTGGAGTTTCATCAGACTCTAAATCTGAAGAAGTTAA
AAAAGACAGTAAGAATGACAATAATTTTAAGTTTGGACTTTCTTCTGGTGTAGGCAACCCAGTTTCTTTAACTCCATTTC
AATGTGGGGTGTCTAATCTTGGGCAACAAGAAAAGAAAGAGGAACTGTCTAACTTTTCCCCTTCAGGCTTTAGCTTTGGT
ACAGGTATTACCAACCCCACCCTTGCTGCTACTAATACTGTCGTGACCTCTGAGAACAAGAGCAGTTTCAACTTTGGAAC
CAGAGAAACCACGAGTGTTTCAGTGGCTTCTTTCACATGTAAGATATCGGAAACAAAAAAAGAAGAAATGCCTGCCACCA
AAGGAGTGTTCACTTTTGGCAGTATGGAAGCTGCTTCTCTGCCATCTGCTTCAATGTTTGTTTTGGGAAGGACGGAAGAG
AAACAGCAAGAGCCTGTCACTTCTCCTTCCCTAGTTTTGGGGAAGAAAGCTGACAACGAAGAACCAATGTGTGTAGAAGT
GTTTTCCTTTGGGAATTCAGAGAAAACCACAGATGAGAGTTCTTCACAGCCCACATGTAGTTTTGGTATGGCAGAAACAT
CTGAGATGGAAATTGAACAGCCAGTAACTTTTGCTTTTGGAGCTCAAACCAATACTACAGTTGATCAAGGTGCAGCAAAG
CCAGTTTTTAGTTTCTTGAACACTTCTTCTAGTTCAAGTACACCAGTGACTTCTGCTGGTGGTGGCGTATTTGGTAGTTC
TATCTCTTCCTCCAATACACCTGTGGCTGCCTTTCCGCTTGGACAGGCCAGCAATCCTGTGAGCAACTCTGCCTCTGGTA
ACACTGCTGAATCCAGTACATCTCAGTTTTTGCTATTTTCTCAAGTTAGCAAACCAGCAACCACATCTAGCACAGCTACA
GCTGTCATGCCATTTGACTTTGGTTCAGGAACCAGCAGCAATAATACTGCAGCCTATGGTTTCAACTCTGGAGCAACAGC
CACATCTAGCTCTACAGGATCCTCCTTTATGTTTGGAACTGGACCTTCAGCACCATCTTCCAGTTCAGCGTTTGGTGCTA
ATCAGATGCTAACATTTGGACAAAATCAAGGTGCCAGCCAGCCTAATCCCTCAGGC

Alignment

ORF - retro_tsyr_1196 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 82.91 %
• Parental protein coverage: 83.97 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  PSTTSTASNYPDVLTRPSLHRSHLNFSMLESSALHCQPSTSSGFPIGSSGFSLVKEIKDSTSQHDDDNIS
          PST.STAS.Y.DV.TRPSLHRSHLNFSMLESSALH.QPSTSSGFPIGS.GFSLVKE.K.STSQHDD.NIS
Retrocopy PSTPSTASDYLDVSTRPSLHRSHLNFSMLESSALHSQPSTSSGFPIGSAGFSLVKEMKASTSQHDDGNIS

Parental  TTSGFSSRASDKDITVSKNTSLPPLWSPEAERSHSLSQHTTTSSKKPAFNLSAFGTLSPSLGNSSVLKTG
          TTSGF.SRAS.KDI.VSKNTSLPPLWSPEA.RSH.LSQHT.TSS.KPAFNLSAFGTLSPSL..S.VLK.G
Retrocopy TTSGFCSRASGKDIAVSKNTSLPPLWSPEADRSHFLSQHTATSSEKPAFNLSAFGTLSPSLEESLVLKSG

Parental  QLGNSPFYP-KTTYGGAAAAVKQSKLRNTPYQAPVRRQMKAKQLSAQSYGVTSSTARRILQSLEKMSSPL
          QL..SPFYP.KT.YG.AAAAV.Q..LRNTPYQAPVRRQMKAKQLSAQS....SSTARRILQ.LEKMSSPL
Retrocopy QLRDSPFYPGKTRYGWAAAAVRQPELRNTPYQAPVRRQMKAKQLSAQS---SSSTARRILQALEKMSSPL

Parental  ADAKRIPSVVSSLNSPLDRSGIDITDIHAKRSKVESQYPPVQRLMTPKPVSIATNRTIYFKPSLTPSXXX
          ADAKRIPSVV..LNSPLDR.GIDITDI.AKR.KVESQYP.VQRLMTPK..SIATNR.IYFKPSLTPS...
Retrocopy ADAKRIPSVVY-LNSPLDRTGIDITDIQAKRTKVESQYPSVQRLMTPKSDSIATNRIIYFKPSLTPSGEL

Parental  XXXXXXXXXXXXTECEKNMTAGQNRERESGFSHTTFSLPAANGLSSGGGGGGGKMRRERTRFVASKPSEE
          ............TE....MT.GQNRERE.G.S.TT.SLPA..GLSS...GG.GKM..............E
Retrocopy RKINQRVDQKHSTEYXXXMTPGQNRERENGLSCTTSSLPATSGLSS---GGSGKMXXXXXXXXXXXXXXE

Parental  EEMEVPVLPKISLPISSSSLPTFNFSSPVITASSPSPMSPSQSLTNKVQMTPLSSTGSPVFRFSSPIVKS
          E.MEVP.LPKISLPIS.SSL.TFN.SSPVITASSPSPMSPSQSLTNKVQMTP.SSTGSPVF.FS.PI.KS
Retrocopy EKMEVPALPKISLPISNSSLSTFNLSSPVITASSPSPMSPSQSLTNKVQMTPPSSTGSPVFTFSPPIIKS

Parental  TEADVLPQSSPSSMGFTFSVPVAKTAEFSGSTSTLDPIISSSAQAITAVNSISCKKMIDEDCEGPFRPAK
          TE..VLP.SSPSSMGFTFS.P.AKTAEFS.S..TL.PI.SSSAQA.TA.NS..CK.MIDEDCEGPFRPAK
Retrocopy TEPYVLPLSSPSSMGFTFSAPIAKTAEFSDSSCTLEPIVSSSAQAATAMNSTGCKRMIDEDCEGPFRPAK

Parental  TLKEGSVLDVLKNPGFSSPQADSLASQPTTTSPVIYTRPAISSFSSSGIEFGESLKAGSSWQCDTCLLQ-
          TLKEGSVLDVLK.PGFSSP.ADSLA.QP.TTSPVIYTRPA.SSFSSSGIEFG..LKA.SSWQC.TCLLQ.
Retrocopy TLKEGSVLDVLKKPGFSSPKADSLAAQPNTTSPVIYTRPATSSFSSSGIEFGGRLKAESSWQCNTCLLQ<

Parental  NKVIDNKCIACQTAKLPPRNPAKQTGIGTPSKSGKAALSASGTGFGDKFKPALGTWDCDTCLVQNKPEAI
          NKVIDNKCIACQTAK.PPR.PAKQTGIGTPSKS.KAALSASGTGFGDK.KPA.GTWDCDTCLVQNKPE.I
Retrocopy NKVIDNKCIACQTAKMPPRDPAKQTGIGTPSKSDKAALSASGTGFGDKCKPAIGTWDCDTCLVQNKPEVI

Parental  KCVACETPKPGTGVKRALTLTVVSESAETITASSSSCTVTTGSLGFGDKFKRPVGSWECSVCCVSNNAED
          KCVACET.KPG..V.RALTL.VVS.SAETITASSSSCTVTTG.LGFGDK..RPVGSWECSVCCVSNNAED
Retrocopy KCVACETLKPGICVRRALTLRVVSKSAETITASSSSCTVTTGTLGFGDKSNRPVGSWECSVCCVSNNAED

Parental  NKCVSCMSEKPGNSVPTSSSSTIPVSLSSGGCLGLDKFKKPEGSWDCEVCLVQNKADSTKCVACESSKPG
          NKCVSCMSEKPGNSVPTS..ST.PVSLSSG.CLGLDKFKKPEGSWDCEVCLVQNKADSTKCVACES.KPG
Retrocopy NKCVSCMSEKPGNSVPTSRGSTVPVSLSSGSCLGLDKFKKPEGSWDCEVCLVQNKADSTKCVACESAKPG

Parental  TKSEFKGFCTSSSSSNPVASSFKFGIPSSSSGPSQTSASTGSFKFGDQGGFKTSVPSDSGSINPTSEGFT
          TKSEFK.FCTSSSSSNP.ASSFKFGIPSSSSGPSQTSA.TGSFKF.DQGGFKT.VPSDSGSINP.SEGF.
Retrocopy TKSEFKDFCTSSSSSNPAASSFKFGIPSSSSGPSQTSACTGSFKFRDQGGFKTGVPSDSGSINPMSEGFI

Parental  FSKPVGDFKFGVSSDSKSEEVKKDSKNDSNFKFGLSSGAGNPVSLTPFQFGVSNLGQQEKKEELSKSSPS
          F.KPVGDFKFGVSSDSKSEEVKKDSKND.NFKFGLSSG.GNPVSLTPFQ.GVSNLGQQEKKEELS..SPS
Retrocopy FCKPVGDFKFGVSSDSKSEEVKKDSKNDNNFKFGLSSGVGNPVSLTPFQCGVSNLGQQEKKEELSNFSPS

Parental  GFSFGTGVTNPTPAATNTIVTSENKSSFNFGTIETTSVSVASFTCKTSETKKEEMPATKGGFTFGSIEAA
          GFSFGTG.TNPT.AATNT.VTSENKSSFNFGT.ETTSVSVASFTCK.SETKKEEMPATKG.FTFGS.EAA
Retrocopy GFSFGTGITNPTLAATNTVVTSENKSSFNFGTRETTSVSVASFTCKISETKKEEMPATKGVFTFGSMEAA

Parental  SLPSASMFVLGRTEEKQQEPVTSTSLVFGKKADNEEPKCQPVFSFGNSEQTKDESSSKPTFSFSMAKTSE
          SLPSASMFVLGRTEEKQQEPVTS.SLV.GKKADNEEP.C..VFSFGNSE.T.DESSS.PT.SF.MA.TSE
Retrocopy SLPSASMFVLGRTEEKQQEPVTSPSLVLGKKADNEEPMCVEVFSFGNSEKTTDESSSQPTCSFGMAETSE

Parental  KESEQPVKATFAFGAQTNTTAXXXXXXXXFSFLNTSYSSSTPATSA-GGIFGSSTSSTNPPVAAFVFGQA
          .E.EQPV..TFAFGAQTNTT.........FSFLNTS.SSSTP.TSA.GG.FGSS.SS.N.PVAAF..GQA
Retrocopy MEIEQPV--TFAFGAQTNTTVDQGAAKPVFSFLNTSSSSSTPVTSAGGGVFGSSISSSNTPVAAFPLGQA

Parental  SNPVSSSAFGNTAESSTSQSLLFSQDSKPATTSSTATAVTPFVFGPGTSSNNTAASGFNFGATTTSSSTG
          SNPVS.SA.GNTAESSTSQ.LLFSQ.SKPATTSSTATAV.PF.FG.GTSSNNTAA.GFN.GAT.TSSSTG
Retrocopy SNPVSNSASGNTAESSTSQFLLFSQVSKPATTSSTATAVMPFDFGSGTSSNNTAAYGFNSGATATSSSTG

Parental  SSFVFGTGPSAPTASPAFGTNQTLTFGQNQGASQPNPAG
          SSF.FGTGPSAP..S.AFG.NQ.LTFGQNQGASQPNP.G
Retrocopy SSFMFGTGPSAPSSSSAFGANQMLTFGQNQGASQPNPSG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tarsius syrichta was not studied using RNA-Seq expression data.

ChIP-Seq

Tarsius syrichta was not studied using ChIP-Seq data.

EST

Tarsius syrichta was not studied using EST data.

TSS

Tarsius syrichta was not studied using FANTOM5 data.

Lab

retro_tsyr_1196 was not experimentally validated.

Homology

Retrocopy orthology:

Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Tarsius syrichta	ENSTSYG00000001251	1 retrocopy	retro_tsyr_1196 ,