RetrogeneDB ID: retro_tsyr_1172

Retrocopy location

• Organism: Tarsier (Tarsius syrichta)
• Coordinates: scaffold_333945:609..1286(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: BTG3
• Ensembl ID: ENSTSYG00000006151
• Aliases: None
• Description: BTG family, member 3 [Source:HGNC Symbol;Acc:1132]

Sequence

>retro_tsyr_1172
ATGAAGAACGAAACTGCTGCTATTGTCTTCTTTTTTACAAGGCTAGTTCGAAAACATGATAAGTTGAAAAAAGAGGCAAT
TGAGAGGTCTGCTGAGAAATTGACTCTGATACTTCAAGAGAAATATAAAAATCACTGGTATCCAGAAAAGTCATCAAAAG
GACAGGCCTACAGATGTATTCCAGTCAATAAGTTCCAGAGAGTTGATCCTGACTTCTGAAAGCCTGTGAGAACAGCTGCA
TCTTGTACAGCGACCTGGGCTTGTCAAAGGAGCTTACTCTCTGAGTGGACCCATGTGAAATGTGCTGTCGGTGTGGAGAG
AAAAACAATGCATTCATTGTTGCCAGCTTTGAAAATGAGGATGAGAACAAGGATGAAATCTCCAAGAAAGTTACCAGAGC
TCTTGATAAGGTTACCTCTGATTATCATTCAGGAACCTCTTTGGATGAAGAAACAAGTAAGGAGGTGGAAGTGAAACCCA
ATTTGGTGACTGCAACCCCAAGTCCTGTGTACCAGATTTCAGAACTTATATATCCACCTCTTCCAGTGTGGCACCCTTTG
TCCAGAAAACAGCCAGGAATGTACCGAGGGAATGGCCATCAGAATCACTACCCTCCTCCTGTTCCATTTGGTTATCCAAA
TCAGGAAAGGAAAAATAAACCATATCTCCAGGTTCCT

Alignment

ORF - retro_tsyr_1172 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 88.6 %
• Parental protein coverage: 90.08 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MKNEIAAVVFFFTRLVRKHDKLKKEAVERFAEKLTLILQEKYKNHWYPEKPSKGQAYRCIRVNKFQRVDP
          MKNE.AA.VFFFTRLVRKHDKLKKEA.ER.AEKLTLILQEKYKNHWYPEK.SKGQAYRCI.VNKFQRVDP
Retrocopy MKNETAAIVFFFTRLVRKHDKLKKEAIERSAEKLTLILQEKYKNHWYPEKSSKGQAYRCIPVNKFQRVDP

Parental  D-VLKACENSCILYSDLGLPKELTLWVDPCEVCCRYGEKNNAFIVASFENEDENKDEISKKVTRALDKVT
          D..LKACENSCILYSDLGL.KELTL.VDPCE.CCR.GEKNNAFIVASFENEDENKDEISKKVTRALDKVT
Retrocopy D<LLKACENSCILYSDLGLSKELTL*VDPCEMCCRCGEKNNAFIVASFENEDENKDEISKKVTRALDKVT

Parental  YDYHSGSSSSDEETSKDVEVKPSSVIATPSPVYQISELIYPPLPMWHPLPRKKPGMYRGNGHQNHYPPPV
          .DYHSG.S..DEETSK.VEVKP..V.ATPSPVYQISELIYPPLP.WHPL.RK.PGMYRGNGHQNHYPPPV
Retrocopy SDYHSGTSL-DEETSKEVEVKPNLVTATPSPVYQISELIYPPLPVWHPLSRKQPGMYRGNGHQNHYPPPV

Parental  PFGYPNQGRKNKPYRPVP
          PFGYPNQ.RKNKPY..VP
Retrocopy PFGYPNQERKNKPYLQVP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tarsius syrichta was not studied using RNA-Seq expression data.

ChIP-Seq

Tarsius syrichta was not studied using ChIP-Seq data.

EST

Tarsius syrichta was not studied using EST data.

TSS

Tarsius syrichta was not studied using FANTOM5 data.

Lab

retro_tsyr_1172 was not experimentally validated.

Homology

Retrocopy orthology:

Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 21 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000003406	1 retrocopy	retro_cjac_4118,
Dasypus novemcinctus	ENSDNOG00000012987	2 retrocopies	retro_dnov_1703, retro_dnov_2682,
Macaca mulatta	ENSMMUG00000002116	1 retrocopy	retro_mmul_2534,
Mustela putorius furo	ENSMPUG00000010746	1 retrocopy	retro_mputfur_849,
Mus musculus	ENSMUSG00000022863	1 retrocopy	retro_mmus_225,
Otolemur garnettii	ENSOGAG00000013303	8 retrocopies	retro_ogar_1693, retro_ogar_1755, retro_ogar_2575, retro_ogar_2769, retro_ogar_2795, retro_ogar_3346, retro_ogar_524, retro_ogar_551,
Ochotona princeps	ENSOPRG00000012837	1 retrocopy	retro_opri_381,
Ictidomys tridecemlineatus	ENSSTOG00000010285	1 retrocopy	retro_itri_617,
Tarsius syrichta	ENSTSYG00000006151	5 retrocopies	retro_tsyr_1172 , retro_tsyr_1406, retro_tsyr_1753, retro_tsyr_231, retro_tsyr_495,