RetrogeneDB ID: | retro_trub_10 | ||
Retrocopylocation | Organism: | Fugu rubripes (Takifugu rubripes) | |
| Coordinates: | scaffold_71:736330..736888(-) | ||
| Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSTRUG00000009865 | |
| Aliases: | None | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
| Parental gene symbol: | cldnh | ||
| Ensembl ID: | ENSTRUG00000009962 | ||
| Aliases: | None | ||
| Description: | claudin h [Source:ZFIN;Acc:ZDB-GENE-010328-8] |
Retrocopy-Parental alignment summary:
>retro_trub_10
ATGCGAACTCAGCTGGTCGGCGTGGGTTTGGCCTTCCTCGGCTTCCTCGGCACCATCCTCATCTGCGGGCTGCCCATGTG
GAAGGTGACGGCCTTTGTTGGCTCAAACATCGTCACGGCTCAGATCTTCTGGGAGGGTCTGTGGATGAACTGTGTGTTTC
AGAGCACAGGTCACTCGCAGTGCAAGGCCTACGACTCGGTTCTGGCTTTGCCACAGGAGCTGCAGGCCTCCCGGGCGTTA
ATCTGCGTCTCCATCGCTGTCAGCGTGGTGGCCATCGGACTGACCGTGGTCGGCGCCCGCTGCACTAACTTCTACCGCGA
TGAAGGATTGACCAAGTCCAACATCGGCCTGTCCGGGGGCATTGTCTTCATCATCGCAGGAGTCTTGTGTATTATTCCTG
TCAGCTGGTCCGCTCACACTATCATCACAGGCTTCTACAACCCTCTACCCACATCAGAGAGGAGGGGGGAACTGGGGGCC
TCCATTTATGTGGGCTGGGCATCTGGAGCTCTTCTTGTCATTGGCGGAGCGGTTTTATGCAGCACCTACAGATGCTGA
ATGCGAACTCAGCTGGTCGGCGTGGGTTTGGCCTTCCTCGGCTTCCTCGGCACCATCCTCATCTGCGGGCTGCCCATGTG
GAAGGTGACGGCCTTTGTTGGCTCAAACATCGTCACGGCTCAGATCTTCTGGGAGGGTCTGTGGATGAACTGTGTGTTTC
AGAGCACAGGTCACTCGCAGTGCAAGGCCTACGACTCGGTTCTGGCTTTGCCACAGGAGCTGCAGGCCTCCCGGGCGTTA
ATCTGCGTCTCCATCGCTGTCAGCGTGGTGGCCATCGGACTGACCGTGGTCGGCGCCCGCTGCACTAACTTCTACCGCGA
TGAAGGATTGACCAAGTCCAACATCGGCCTGTCCGGGGGCATTGTCTTCATCATCGCAGGAGTCTTGTGTATTATTCCTG
TCAGCTGGTCCGCTCACACTATCATCACAGGCTTCTACAACCCTCTACCCACATCAGAGAGGAGGGGGGAACTGGGGGCC
TCCATTTATGTGGGCTGGGCATCTGGAGCTCTTCTTGTCATTGGCGGAGCGGTTTTATGCAGCACCTACAGATGCTGA
ORF - retro_trub_10 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 62.57 % |
| Parental protein coverage: | 98.35 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | QILGIGLAVLGWLGNILICMLPLWKVSAFIGANIVTAQVFWQGLWMNCVFQSTGQMQCKVYDSMLALPQD |
| Q..G.GLA.LG.LG.ILIC.LP.WKV.AF.G.NIVTAQ.FW.GLWMNCVFQSTG..QCK.YDS.LALPQ. | |
| Retrocopy | QLVGVGLAFLGFLGTILICGLPMWKVTAFVGSNIVTAQIFWEGLWMNCVFQSTGHSQCKAYDSVLALPQE |
| Parental | LQAARALTIVSIIVGLVALLISMVGAKCTNCIEDEGGAKAKVMIIAGIFFILGGVLVLIPVSWTAHVVIR |
| LQA.RAL..VSI.V..VA.....VGA.CTN...DEG..K.......GI.FI..GVL..IPVSW.AH..I. | |
| Retrocopy | LQASRALICVSIAVSVVAIGLTVVGARCTNFYRDEGLTKSNIGLSGGIVFIIAGVLCIIPVSWSAHTIIT |
| Parental | DFYNPILNNSQRRELGAALYIGWAAAALLLIGGAMLCSS |
| .FYNP......R.ELGA..Y.GWA..ALL.IGGA.LCS. | |
| Retrocopy | GFYNPLPTSERRGELGASIYVGWASGALLVIGGAVLCST |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Takifugu rubripes was not studied using RNA-Seq expression data.
Takifugu rubripes was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_trub_10 retrocopy.
Takifugu rubripes was not studied using FANTOM5 data.
retro_trub_10 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_trub_10 has 0 orthologous retrocopies within teleost group .Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Takifugu rubripes | ENSTRUG00000009962 | 1 retrocopy |
retro_trub_10 ,
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