RetrogeneDB ID: retro_tnig_33

Retrocopy location

• Organism: Tetraodon (Tetraodon nigroviridis)
• Coordinates: Un_random:65106701..65107059(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSTNIG00000004032
• Aliases: None
• Description: None

Sequence

>retro_tnig_33
ACGCAGGAGCAGCAGCCCGCCGACGAGAACTGGGACCCCAGCGGGCAGACGTGGCCCTGCCAGAGCAGCCGCTCCCACAT
CGCCCAGTACCAGGCGTCCAGCTTCCAGGAGAGCCTGCAGGTACGCGCACGCGCACACGCACCTCATCTCACCCCCGGCT
CTCCCTGACACCCTGTCTTCTTCTTCCAGGAGGACCCGGCCCCGGAGGGCGGCAGGTAAGGCTGCGCCCGGGCCCCCTGT
CTCCCCCCGAGGCTACAGTCTTTGTGCTTGGCAGCGAGCAGAAAGGTCAGGACCAACATTGACTTGTCCGATCCAAAGAA
GTGAGCTGCTGAGAGAAAAACCAATGGTTTTTCTGTGT

Alignment

ORF - retro_tnig_33 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 50.41 %
• Parental protein coverage: 66.3 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  SQTRRPSERTWLKQGKTEPTADSTLPHSSLFLPAGEPAGRRGPARAAAP-TSPSTRRPASRRACRRTRPR
          .Q...P....W...G.T.P...S...H................ARA.AP..SP...........RRTRPR
Retrocopy TQEQQPADENWDPSGQTWP-CQSSRSHIAQYQASSFQESLQVRARAHAP>ISPPALPDTLSSSSRRTRPR

Parental  RKAGKAAPGPPVSPRGYSLCAWQRAERSGPTLTCPIQRSGSLSSRTCLPSC
          R.AGKAAPGPPVSPRGYSLCAWQRAERSGPTLTCPIQRS..L........C
Retrocopy RAAGKAAPGPPVSPRGYSLCAWQRAERSGPTLTCPIQRSELLREKPMVFLC

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tetraodon nigroviridis was not studied using RNA-Seq expression data.

ChIP-Seq

Tetraodon nigroviridis was not studied using ChIP-Seq data.

EST

Tetraodon nigroviridis was not studied using EST data.

TSS

Tetraodon nigroviridis was not studied using FANTOM5 data.

Lab

retro_tnig_33 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_tnig_33 has 0 orthologous retrocopies within teleost group .

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Tetraodon nigroviridis	ENSTNIG00000004032	1 retrocopy	retro_tnig_33 ,