RetrogeneDB ID: retro_tnig_10

Retrocopy location

• Organism: Tetraodon (Tetraodon nigroviridis)
• Coordinates: 12:11949867..11950992(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSTNIG00000011489
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: npy8ar
• Ensembl ID: ENSTNIG00000013601
• Aliases: None
• Description: neuropeptide Y receptor Y8a [Source:ZFIN;Acc:ZDB-GENE-990415-175]

Sequence

>retro_tnig_10
TGTCGGCGCGGTGAGGTGGGCGTCGCCATGGAGCCGCAGCCCAACTCCAACCACAACCAGGCGCCGTGGAAGGAGTTCCC
CTGGGACCTGTCGGACGACTGCTCGCTGTCGGTGGGCGGCACCACCTTCCTGATCGCGGCCTACAGCGCCGTCATGGCGG
TGGGTCTCATCGGGAACTCCTGCCTGGTCTTCATCATCCTGTGGCACAAGGAGATGCGCAACGTCACCAACGTCTTCATT
GCCAACCTGTCCTGCTCCGACATCCTGATGGGCGTGGTGTGCCTGCCGGTCACCATCGTCTACACGCTGATGGACCGCTG
GGTCCTGGGAGACGCCCTGTGCAAGCTCACGCCCTTCGTCCAGTGCATCTCCGTGTCCGTGTCCGTCTTCTCGCTGGTCC
TCATCACCATGGAGCGCTACCAGCTCATCGTCCACCCCACCGGGTGGAGGCCGGTGCTGGGCCAGGCCTACCTGGCGGTG
GGGCTCACCTGGGTGGTGGCGGGCCTGGCCTCCGCGCCCTTCCTCTCCTACAGCGTGCTCACCCTGCCCTTCCAGAACCT
GAGCGTCCCCTTCCCCATCGGCGACCACCTCATCTGCATGGAGCGCTGGCCGTCGGTGGAGGCGCGGCGCGCCTACACCA
CCTCCCTGCTGGTCTTCCAGTACTTCCTCCCGCTGGCGCTCATCACCGGCTGCTACCTGCACATTTACCTGCGCCTGAGG
AGGCGGAAGGACGCGGTGGAGCGCGGGCGGAGCGCCAACCCCAAGAGGAACCGGGGCTCGGCCAGGATCAACGCCATGCT
GGTCTCCATCGTGGTGGCCTTCGCCGTCTCCTGGCTGCCGCTGAACGTCTTCAACGCCGTGTTCGACTGGCACCACGAGG
CCATCCCGTCCTGCAGCCACGACGCCATCTTCTCCTTCTGCCACCTGGCGGCCATGGCGTCCACCTGCATCAACCCCGTC
ATCTACGGCTTCCTCAACAGCAACTTCCAGAAGCAGCTGAAGGCGTCGCTGCTGCGCTGCCGCTGCTGGGGCGCCGCCGA
GAGGTACGAGAGCATCCCGCTGTCCACCGTCAGCACCGAGGTCACCAAGGGCTCCGTCCTCAGCAACGGGTCCCTGAGCG
CCAAC

Alignment

ORF - retro_tnig_10 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 66.9 %
• Parental protein coverage: 86.38 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  IVAYSAIIAIGLLGNAGLVFIIARQQELRNVTNILIANLSCSDILMCVVCLPVTVIYTLMDRWVLGEALC
          I.AYSA..A.GL.GN..LVFII....E.RNVTN..IANLSCSDILM.VVCLPVT..YTLMDRWVLG.ALC
Retrocopy IAAYSAVMAVGLIGNSCLVFIILWHKEMRNVTNVFIANLSCSDILMGVVCLPVTIVYTLMDRWVLGDALC

Parental  KVTPFVQCMSVTVSIFSLVLIALERHQLILHPTGWSPAAGHSYLAVGLTWLVACFISLPFLSFNVLTNDP
          K.TPFVQC.SV.VS.FSLVLI..ER.QLI.HPTGW.P..G..YLAVGLTW.VA...S.PFLS..VLT..P
Retrocopy KLTPFVQCISVSVSVFSLVLITMERYQLIVHPTGWRPVLGQAYLAVGLTWVVAGLASAPFLSYSVLTL-P

Parental  FQNISLPANPFRDHLVCMELWPSDKHRLAYMTSLLVFQYCLPLVLVLLC----YLRIFLRLKR-RRDMLE
          FQN.S.P..P..DHL.CME.WPS...R.AY.TSLLVFQY.LPL.L...C....YLR...R.....R....
Retrocopy FQNLSVPF-PIGDHLICMERWPSVEARRAYTTSLLVFQYFLPLALITGCYLHIYLRLRRRKDAVERGRSA

Parental  RSRRTRGAQRINVMLLAIVVAFALCWLPLNVFNTLFDWHHQALPDCQHDAIFSACHLTAMASTCINPVVY
          ...R.RG..RIN.ML..IVVAFA..WLPLNVFN..FDWHH.A.P.C.HDAIFS.CHL.AMASTCINPV.Y
Retrocopy NPKRNRGSARINAMLVSIVVAFAVSWLPLNVFNAVFDWHHEAIPSCSHDAIFSFCHLAAMASTCINPVIY

Parental  GFLN
          GFLN
Retrocopy GFLN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tetraodon nigroviridis was not studied using RNA-Seq expression data.

ChIP-Seq

Tetraodon nigroviridis was not studied using ChIP-Seq data.

EST

Tetraodon nigroviridis was not studied using EST data.

TSS

Tetraodon nigroviridis was not studied using FANTOM5 data.

Lab

retro_tnig_10 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_tnig_10 has 1 orthologous retrocopies within teleost group .

Species	RetrogeneDB ID
Takifugu rubripes	retro_trub_17

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Tetraodon nigroviridis	ENSTNIG00000013601	1 retrocopy	retro_tnig_10 ,
Takifugu rubripes	ENSTRUG00000018631	1 retrocopy	retro_trub_17,
Xiphophorus maculatus	ENSXMAG00000000370	1 retrocopy	retro_xmac_12,