RetrogeneDB ID:

retro_tcac_4

Retrocopy
location
Organism:Cacao (Theobroma cacao)
Coordinates:4:2337275..2338265(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:TCM_017203
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:TCM_020494
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_tcac_4
ATGCCTTCAATTCCAGAAGAGCCACTGCTCGCCTCGAACCCGGACCGGTTTTGCATGTTCCCGATCCAATACCCGGAAGT
ATGGGAAATGTACAAGAAAGCCGAAGCCTCCTTTTGGACCGCCGAGGAAGTCGATCTCTCGTCGGATCTACGCCACTGGG
AAACTCTTACCGATGGCGAACGCCACTTCATCACTCACGTCCTCGCCTTCTTCGCAGCCTCCGATGGCATCGTCCTCGAA
AATCTCGCCGTTCGGTTCATGAAGGAAGTCCAAATCGCCGAGGCTCGTGCGTTCTATGGCTTCCAAATCGCCATCGAAAA
TATCCACTCCGAGATGTATAGTCTCCTCCTTGAAACTTACATCAAGGACTCCAACGAAAAGAACCGGCTCTTCCACGCCG
TCGAAACAGTGCCGTGTGTGGCTAAGAAAGCCGAGTGGGCGTTGAAATGGATCGACGGTTCGGAAACTTTCGCCGAACGG
CTAATCGCTTTTGCTTGCGTGGAAGGGATTTTCTTCTCTGGAAGTTTCTGCGCTATATTTTGGTTAAAAAAGCGCGGGTT
AATGCCTGGATTAACTTTCTCGAACGAGTTAATCTCACGAGATGAAGGTCTCCATTGCGATTTCGCTTGCTTGCTGTACT
CCCTCCTCCGGTCAAAGCTGAGCGAAGAGCGCGTGAGAGGGTTAGTGAGGGACGCAGTGGATATAGAGAGGGAGTTTGTA
TGTGATGCTCTGCCGTGCGCATTGGTTGGGATGAACGGAGAGCTGATGAGTCAGTACATCGAGTTCGTCGCAGATCGGTT
GTTGGGAGCGTTGGGGTACGGGAAGATGTACAATGTGGCTAACCCTTTTGATTGGATGGAACTGATTTCGTTGCAAGGCA
AAACTAATTTCTTCGAGAAAAGAGTTGGAGAGTACCAGAAAGCGGCGGTCATGTCGAGTTTGAATGGAAATGGTGGGACC
CATGAGTTCAAGATGGATGAAGATTTTTAG

ORF - retro_tcac_4 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 75.38 %
Parental protein coverage: 69.15 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalEEPILKKQNQRFCMFPIRYQTLWEMYKKAEASFWTAEEVDLSQDVQHWDALSNSEKHFISHVLAFFAASD
EEP.L.....RFCMFPI.Y...WEMYKKAEASFWTAEEVDLS.D..HW..L...E.HFI.HVLAFFAASD
RetrocopyEEPLLASNPDRFCMFPIQYPEVWEMYKKAEASFWTAEEVDLSSDLRHWETLTDGERHFITHVLAFFAASD
ParentalGIVLENLAARFLNDVQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAVESIPCVSKKAK
GIVLENLA.RF...VQI.EARAFYGFQIA.ENIHSEMYSLLLETYIKDS.EK.RLF.AVE..PCV.KKA.
RetrocopyGIVLENLAVRFMKEVQIAEARAFYGFQIAIENIHSEMYSLLLETYIKDSNEKNRLFHAVETVPCVAKKAE
ParentalWALDWIQSSSLFAERLVAFACVEGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYGL
WAL.WI..S..FAERL.AFACVEGIFFSGSFC.IFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLY.L
RetrocopyWALKWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSL