RetrogeneDB ID: retro_tbel_56

Retrocopy location

• Organism: Treeshrew (Tupaia belangeri)
• Coordinates: scaffold_18111:1018..1345(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSTBEG00000010764
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: FKBP1B
• Ensembl ID: ENSTBEG00000012282
• Aliases: None
• Description: FK506 binding protein 1B, 12.6 kDa [Source:HGNC Symbol;Acc:3712]

Sequence

>retro_tbel_56
ATGGGAGGGCAGGTGGAGAACATCTCCCCTGGAGACTGGCAGACCTTCCCCAAGGGTGGCCAGACCTGCGTGGTGCATGA
CACCAGGAGGCTTGAAGATGGAAAGAAATTTGACTCTTCCCAGGACAGAAACAAGCCCTTTAAGTTCATGCTGGGCAAAC
AGGAGGTGATCCGAGGCTGGGAAGAAGGGGTTGCCCAGATGAGTGTGGGCCAGACAGCCAAACTGACCACCTCCCCAGAC
TATGCCTACGATGCTACTGGGCACCCAGGCATCATCCCACCACTGGCCACTCTCATCTTCCACGTGGAACTTCTACAACT
GGAATGA

Alignment

ORF - retro_tbel_56 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 70.53 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  RTFPKKGQTCVVHYTGMLQNGKKFDSSRDRNKPFKFRIGKQEVIKGFEEGAAQMKL-QRAKLTCTPD-VY
          .TFPK.GQTCVVH.T..L..GKKFDSS.DRNKPFKF..GKQEVI.G.EEG.AQM...Q.AKLT..PD..Y
Retrocopy QTFPKGGQTCVVHDTRRLEDGKKFDSSQDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQTAKLTTSPDYAY

Parental  GATG-PGVIPN-ATLIFDVELLNLE
          .ATG.PG.IP..ATLIF.VELL.LE
Retrocopy DATGHPGIIPPLATLIFHVELLQLE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tupaia belangeri was not studied using RNA-Seq expression data.

ChIP-Seq

Tupaia belangeri was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_tbel_56 retrocopy.

TSS

Tupaia belangeri was not studied using FANTOM5 data.

Lab

retro_tbel_56 was not experimentally validated.

Homology

Retrocopy orthology:

Tupaia belangeri does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 11 parental genes, and 25 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000002797	1 retrocopy	retro_amel_1717,
Ciona savignyi	ENSCSAVG00000006859	1 retrocopy	retro_csav_11,
Erinaceus europaeus	ENSEEUG00000013920	2 retrocopies	retro_eeur_135, retro_eeur_514,
Echinops telfairi	ENSETEG00000018990	2 retrocopies	retro_etel_186, retro_etel_2071,
Homo sapiens	ENSG00000119782	1 retrocopy	retro_hsap_1329,
Macropus eugenii	ENSMEUG00000010689	1 retrocopy	retro_meug_14,
Microcebus murinus	ENSMICG00000001530	1 retrocopy	retro_mmur_257,
Pan troglodytes	ENSPTRG00000011708	1 retrocopy	retro_ptro_906,
Sorex araneus	ENSSARG00000013808	1 retrocopy	retro_sara_24,
Tupaia belangeri	ENSTBEG00000006017	13 retrocopies	retro_tbel_1032, retro_tbel_1125, retro_tbel_1696, retro_tbel_1783, retro_tbel_2151, retro_tbel_2569, retro_tbel_3297, retro_tbel_3567, retro_tbel_3807, retro_tbel_4222, retro_tbel_4482, retro_tbel_730, retro_tbel_800,
Tupaia belangeri	ENSTBEG00000012282	1 retrocopy	retro_tbel_56 ,