RetrogeneDB ID:

retro_tbel_4718

Retrocopy
location
Organism:Treeshrew (Tupaia belangeri)
Coordinates:scaffold_98722:1267..1822(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSTBEG00000000209
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_tbel_4718
ATGGCAGTGGCCAAGGCAGGGTCCTAGCAGTCTGCTGACTACAAAGGACAACCCAGAACATGGTGCCGGTGGGTGTGTGA
ACAGTCTGTCATGTTACCTAGGACATGCTCCCAGGGCCCTATTATAAGACCACAGAAAAAAAAGGCCCCACCACTAAGAA
GTATAATTTGTGCATGGAAGTCTACAAGCCTTACCTGTTTGATGGCATGGGGTATGGTTTCTACCCAAAGCTCCCTAACT
GCTTACAGAGGAGGAGGATCCATGGTATGACTGGGACTACTCAGATCTGAGATTGAACTGGGGTGAACCGATACACTGGG
ACCTAGACATGTATATCAGAAACGGTGTGGAACATCCCCTACACCTGTTTCCTGGAATGTCATGTGTAAACAGCTCTTTA
GGTTTGTGGCCTTCATGATGTTCATGTTCTAGGAGGGAGAGAATTACCCCTCCTACCAACCAATGGGGCCAAAGCAGTAT
CTTTATAATGATCTGTACCTGGAATGAGGCAGTGATCTCACCAAAGAACCTGAGGTGGTGGTTCACTCTGAGATC

ORF - retro_tbel_4718 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 70.37 %
Parental protein coverage: 100. %
Number of stop codons detected: 5
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalMAAARAG-VLGIRWLQRATRNVVPLGARTASHVTKDMLPGPYPKTPEERAAAAKKYNMRVEDYEPYPDDG
MA.A.AG.VL....LQR.T.N.VP.G..T..HVT.DMLPGPY.KT........KKYN...E.Y.PY..DG
RetrocopyMAVAKAG<VLAVC*LQRTTQNMVPVGV*TVCHVT*DMLPGPYYKTTXXXGPTTKKYNLCMEVYKPYLFDG
ParentalMGYGDYPKLPDHSQ-QERDPWYDWDHSDLRMNWGEPIHWDLDMYIRNRVD-TSPTPVSWNVMCKHLFGFV
MGYG.YPKLP...Q..E.DPWYDWD.SDLR.NWGEPIHWDLDMYIRN.V..TSPTPVSWNVMCK.LF.FV
RetrocopyMGYGFYPKLPNCLQ<EEEDPWYDWDYSDLRLNWGEPIHWDLDMYIRNGVE<TSPTPVSWNVMCKQLFRFV
ParentalAFMMFMFWLGENYPSYLPAGPKQYPYNDLYLERGGDPTKEPEPVVHYEI
AFMMFMF..GENYPSY.P.GPKQY.YNDLYLE.G.D.TKEPE.VVH.EI
RetrocopyAFMMFMF*EGENYPSYQPMGPKQYLYNDLYLE*GSDLTKEPEVVVHSEI

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide