RetrogeneDB ID: retro_tbel_3675

Retrocopy location

• Organism: Treeshrew (Tupaia belangeri)
• Coordinates: scaffold_148225:132..702(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSTBEG00000004341
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: FBXO45
• Ensembl ID: ENSTBEG00000011780
• Aliases: None
• Description: F-box protein 45 [Source:HGNC Symbol;Acc:29148]

Sequence

>retro_tbel_3675
CTGTCAGAGCTGCGGAGCTGCACCCTGGTGTTCAAGCACTGGAAGCACTGGTACCGCTGCCTGCAAGGTGACAAGAACAG
CGAGGTGTGGCGGAACCTGTGTGCCTGCAGCCTGGCAGAAGAGGATCTGCGCACAGACATCCTCTGCAACCTGCCCAGCT
ACAAGGCCAAGGGACCAGCTTTCCAACAGGCCTTCAGCACTGATGACTGCTCCAGGAATGTCTACATTAAGAATGGCTTC
ACTTTGCATGGAAACGCTATTGCTCAGAGCACTGATGGTGCAAGGACCAAGACTGGTTCCAGTGAGGGTCGCCACGCCTG
GGAAATATGGTGGGAGGGGCCTTTGGGCACTGTGGTGGTGATAGGAATTGCCACAAAACGGGCCCCCGTGCAGTGCCAAG
GTTATGTGGCATTGCTGGGCAGTGATGATCAGAGCTGGGGCTGGAATCTGGTGGACACTAATCTGCTACATAATGGAGAA
GTCCATGGCTGTTTTCCACAGTGCAACAATGCACCAAAATATCAGATTGGCGAAAGAATTGGAGTCACCTTGGACATGGA
GGATAAGACT

Alignment

ORF - retro_tbel_3675 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 79.58 %
• Parental protein coverage: 80.26 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LSELWCCALVF---KHWYYCLHDNENGEVWWSLCARSLGEEALHTDILCNLPSYKVKVRAFQHAFSTNDC
          LSEL..C.LVF...KHWY.CL....N.EVW..LCA.SL.EE.L.TDILCNLPSYK.K..AFQ.AFST.DC
Retrocopy LSELRSCTLVFKHWKHWYRCLQGDKNSEVWRNLCACSLAEEDLRTDILCNLPSYKAKGPAFQQAFSTDDC

Parental  SRNVYIKEDCFTLHRNPIAQSTDGARTKIGFSEGRHAWEVWWEG-LGTVAVIGIATKRAPMQCQGYVALL
          SRNVYIK...FTLH.N.IAQSTDGARTK.G.SEGRHAWE.WWEG.LGTV.VIGIATKRAP.QCQGYVALL
Retrocopy SRNVYIKNG-FTLHGNAIAQSTDGARTKTGSSEGRHAWEIWWEGPLGTVVVIGIATKRAPVQCQGYVALL

Parental  GSDDQSWGWNLVDNNLLHNGEVNGSFPQCNNAPKYQIGERIRVILDMEDKT
          GSDDQSWGWNLVD.NLLHNGEV.G.FPQCNNAPKYQIGERI.V.LDMEDKT
Retrocopy GSDDQSWGWNLVDTNLLHNGEVHGCFPQCNNAPKYQIGERIGVTLDMEDKT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tupaia belangeri was not studied using RNA-Seq expression data.

ChIP-Seq

Tupaia belangeri was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_tbel_3675 retrocopy.

TSS

Tupaia belangeri was not studied using FANTOM5 data.

Lab

retro_tbel_3675 was not experimentally validated.

Homology

Retrocopy orthology:

Tupaia belangeri does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 1 parental gene, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Tupaia belangeri	ENSTBEG00000011780	2 retrocopies	retro_tbel_2409, retro_tbel_3675 ,