RetrogeneDB ID: retro_tbel_3136

Retrocopy location

• Organism: Treeshrew (Tupaia belangeri)
• Coordinates: scaffold_131275:5503..6289(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ASZ1
• Ensembl ID: ENSTBEG00000010882
• Aliases: None
• Description: ankyrin repeat, SAM and basic leucine zipper domain containing 1 [Source:HGNC Symbol;Acc:1350]

Sequence

>retro_tbel_3136
GACAAAGGCATTAGTGTAGATTCCAGCTTTCGATGTGGATGGACTCCCCTTATGTATACTGCTAGCGTTGCCAATGTAGA
ACTTGTTCGAGTCCTTTTGGACAAAGGTGCTAATGCAAGCTTTGATAAGGATAAGCAAACTATTTTGATAACTGCGTGCT
CTGCTCGTGGCTCAGAACAGATTTTGAAGTGTGTAGAGCTACTACTTTCAAGAAATGCTGACCCAAATGTCCCTTGTAGG
AGACTTATGACTCCAATCATGTATGCTGCACGAGATGGCCACCCTCAGGTTGTGGCTCTCCTTGTTGCTCATGGAGCGGA
AATTAACACCCAGGATGAGAATGGCTATACTGCTTTAACATGGGCATCACGTCAAGGTCATAAAAATGTAGTTTTGAAGT
TGCTGGAACTTGGAGCTAATAAAATGCTACAAACCAAAGATGGAAAGACACCAAGTGAGATTGCAAAAAGAAATAAACAT
CTTGAGATCTTCAACTTGCTTTCTTTGACTTTAAATCCAGTAGAAGGAAAGCTTCAACAGCTAACTAAAGAAGAGACTAT
TTGTAAACTACTGACAACAGATTCTGATAAAGATAAAGATAACATATTTAGTTCATACACAGCATTTGGAGATCTGGAAA
TATTTTTCCATGGTCTTGGACTTGAACATATGACAGATGTATTAAAGGAAAGGGATATAACTTTAAGACACCTGTTGACC
ATGAGGAAAGATGAGTTTATAAAGAATGGAATTAGTAGTAAAGATCAGCAGAAAATTCTGGCTGCT

Alignment

ORF - retro_tbel_3136 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 98.48 %
• Parental protein coverage: 59.91 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  DSGISVDSSFRYGWTPLMYTASVANVELVRVLLDKGANASFDKDKQTILITACSARGSEEQILKCVELLL
          D.GISVDSSFR.GWTPLMYTASVANVELVRVLLDKGANASFDKDKQTILITACSARGS.EQILKCVELLL
Retrocopy DKGISVDSSFRCGWTPLMYTASVANVELVRVLLDKGANASFDKDKQTILITACSARGS-EQILKCVELLL

Parental  SRNADPNVPCRRLMTPIMYAARDGHPQVVALLVAHGAEINTQDENGYTALTWASRQGHKNVVLKLLELGA
          SRNADPNVPCRRLMTPIMYAARDGHPQVVALLVAHGAEINTQDENGYTALTWASRQGHKNVVLKLLELGA
Retrocopy SRNADPNVPCRRLMTPIMYAARDGHPQVVALLVAHGAEINTQDENGYTALTWASRQGHKNVVLKLLELGA

Parental  NKMLQTKDGKTPSEIAKRNKHLEIFNLLSLTLNPVEGKLQQLTKEETICKLLTTDSDKDKDNIFSSYTAF
          NKMLQTKDGKTPSEIAKRNKHLEIFNLLSLTLNPVEGKLQQLTKEETICKLLTTDSDKDKDNIFSSYTAF
Retrocopy NKMLQTKDGKTPSEIAKRNKHLEIFNLLSLTLNPVEGKLQQLTKEETICKLLTTDSDKDKDNIFSSYTAF

Parental  GDLEIFLHGLGLEHMTDVLKERDITLRHLLTMRKDEFIKNGISSKDQQKILAA
          GDLEIF.HGLGLEHMTDVLKERDITLRHLLTMRKDEFIKNGISSKDQQKILAA
Retrocopy GDLEIFFHGLGLEHMTDVLKERDITLRHLLTMRKDEFIKNGISSKDQQKILAA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tupaia belangeri was not studied using RNA-Seq expression data.

ChIP-Seq

Tupaia belangeri was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_tbel_3136 retrocopy.

TSS

Tupaia belangeri was not studied using FANTOM5 data.

Lab

retro_tbel_3136 was not experimentally validated.

Homology

Retrocopy orthology:

Tupaia belangeri does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Tupaia belangeri	ENSTBEG00000010882	4 retrocopies	retro_tbel_2141, retro_tbel_3136 , retro_tbel_4013, retro_tbel_4696,