RetrogeneDB ID:

retro_tbel_2746

Retrocopy
location
Organism:Treeshrew (Tupaia belangeri)
Coordinates:scaffold_118053:145477..146051(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:LXN
Ensembl ID:ENSTBEG00000017673
Aliases:None
Description:latexin [Source:HGNC Symbol;Acc:13347]


Retrocopy-Parental alignment summary:






>retro_tbel_2746
GGGACCCCCCACAGGTGTTCTGGTGCAGATGATCAAACTAGCAGCATGGAAGATAATCTGGGAAGAGGACATAAGTATCG
CATTAAATTTTCCATGGAAGAAATTATCCAAAAAATGTTAAGGTGAGCTGTACAGCTGAAGTACTTATCCTCCTGTGGGA
CAAGTTACTGCACCAGAAGTCAACTTTACATTTGAAGGGGAAATCGGAAAGAATGCAGATGAAGAAAATACATTTTATCA
AAGACTCAAGTCCCATGAAGGAACCACGAGAAGCACAAAATATTCCAGGCAGTTTTGGAAATTATCTCCAGAAATGAAGC
CAGTTCGACATTTAGCCTGGGTTGCCTGTGGTTATATAATATGGCAGAATTCTACAGAAAACACCTGGTATAAAATGGCA
AAGATTCAAACTGCCAAGCAAGTGCAAAGAAATGACGACTTTATTGAATTAGACTACACCATTCTACTTCATGACATTGC
ATCTCAGGAGATGATTCCTTGGCAAATGCAAGTTCTCTGGCATCCACAACATGGTACTAAAGTCAAACATAATAGCCATC
TGCCAAAGGAAGAA

ORF - retro_tbel_2746 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 85.57 %
Parental protein coverage: 87.78 %
Number of stop codons detected: 0
Number of frameshifts detected 7


Retrocopy - Parental Gene Alignment:

ParentalGTPHK-VF-LVQTVKQA-SMEDIPGRGHKYRLKFSVEEIIQK-KVTVNCTAEVL-YPPVGQATAPEVNFT
GTPH..VF.LVQ..K.A.SMED..GRGHKYR.KFS.EEIIQK..V.V.CTAEVL.YPPVGQ.TAPEVNFT
RetrocopyGTPHR<VF<LVQMIKLA<SMEDNLGRGHKYRIKFSMEEIIQK<NVKVSCTAEVL<YPPVGQVTAPEVNFT
ParentalFEGEIGKNPDEEDNTFYQRLKS-MKEPLEAQNIPDSFGN-VSPEMKPVRHLAWVACGYIIWQNSTENTWY
FEGEIGKN.DEE.NTFYQRLKS.MKEP.EAQNIP.SFGN..SPEMKPVRHLAWVACGYIIWQNSTENTWY
RetrocopyFEGEIGKNADEE-NTFYQRLKS>MKEPREAQNIPGSFGN<LSPEMKPVRHLAWVACGYIIWQNSTENTWY
ParentalKMAKIQTVKQVQRNDDFIELDYTILLHDIASQEIIPWQMQVLWHPQYGTKVKHNSRLPKEQ
KMAKIQT.KQVQRNDDFIELDYTILLHDIASQE.IPWQMQVLWHPQ.GTKVKHNS.LPKE.
RetrocopyKMAKIQTAKQVQRNDDFIELDYTILLHDIASQEMIPWQMQVLWHPQHGTKVKHNSHLPKEE

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide