RetrogeneDB ID:

retro_tbel_2678

Retrocopy
location
Organism:Treeshrew (Tupaia belangeri)
Coordinates:scaffold_116117:21712..22326(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPL6
Ensembl ID:ENSTBEG00000008626
Aliases:None
Description:ribosomal protein L6 [Source:HGNC Symbol;Acc:10362]


Retrocopy-Parental alignment summary:






>retro_tbel_2678
ATGGCAGACTAAAAAGCTCAGAAGCAGGATACTAAGGAGAAGAAACCTGAAGCCAAGAAGGCTGATGCCAGTGGCAAGGT
TAAAGAGGGAGGAGACCTCAAGGGTAAAATGCTCAAGAAGGGGAAGCCTCATTGTAGCTGAAATGTAGTCCTAGTCTGGG
GCATCGGCAGATACTCCTGATCTGCCCTGCATTCCAGGAAGGCCATATACAAGAGGAAATACTTGGCCACTAAATCCAGG
ATTGAAAACAAAAAGGAGAAGGTTTTTGCCACTGTCACAAAACCAGTTGGAGGTGACAAGAATGGTGGTACCCACGTGGT
TAAAGTTTGCAAAATGTCTAGGTATTATCCTACTGAAGATGTGCCTAGAAAGCTGTTGAGCCATGGCAAAAAAGCCTTCA
GTCAGCATGTGAGAAAGCTGTGAGCTAGCATCACTCCCTGGACCATTCTGACCATCCTCACTGGGCGCACAGAGGCAAGA
GAGTGGTTTTCCTGAAGCAGCTGAGCAGTGGCTTGCTACTTGTGACTGGACCTCTGGTCCCCAACTGAATTCCACTGTGT
AAAACACAGCAGAAATTTGTCATTGCTGCCACCACAAAAATTGATATTGGTAAA

ORF - retro_tbel_2678 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 78.26 %
Parental protein coverage: 71.08 %
Number of stop codons detected: 5
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMAGDKAAKQDTKEKKPEAKKADASGKVKKD-DPKAKKPKKGKPHCSRNPVLVRGIGRYSRSAMYSRKAMY
MA..KA.KQDTKEKKPEAKKADASGKVK...D.K.K..KKGKPHCS.N.VLV.GIGRYS.SA..SRKA.Y
RetrocopyMAD*KAQKQDTKEKKPEAKKADASGKVKEGGDLKGKMLKKGKPHCS*NVVLVWGIGRYS*SALHSRKAIY
ParentalKRKYSATKSRIEKKKKEKVLATVTKPVGGDKNGGTRVVKLRKMPRYCLTE-VPRKLLSHGKKPFSQHVRK
KRKY.ATKSRIE.KK.EKV.ATVTKPVGGDKNGGT.VVK..KM.RY..TE.VPRKLLSHGKK.FSQHVRK
RetrocopyKRKYLATKSRIENKK-EKVFATVTKPVGGDKNGGTHVVKVCKMSRYYPTEDVPRKLLSHGKKAFSQHVRK
ParentalLRASITPGTFLFILTG-PPRGKRVVFLKQLSSGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISK
L.ASITP.T.L.ILTG...RGKRVVFLKQLSSGLLLVTGPLV.N..PL..T.QKFVIA..TKIDI.K
RetrocopyL*ASITPWTILTILTG<AHRGKRVVFLKQLSSGLLLVTGPLVPN*IPLCKTQQKFVIAATTKIDIGK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide