RetrogeneDB ID: retro_tbel_2242

Retrocopy location

• Organism: Treeshrew (Tupaia belangeri)
• Coordinates: scaffold_106833:6187..6527(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: KRAS
• Ensembl ID: ENSTBEG00000003830
• Aliases: None
• Description: Kirsten rat sarcoma viral oncogene homolog [Source:HGNC Symbol;Acc:6407]

Sequence

>retro_tbel_2242
ATGACTGAGTACAAACTGGTGGTGGTTGGAACAGGTGGTGCTGGAAAAAGTGCGCTGAAATCCAGCTAATCCAGAACCAC
TTTGTAGATGAATATGGTCCCACCATAGCGGATTCTTACTGAAAACGAGTGGTAACAGATGGTGAAACCTGTCTGTAGGA
CATACCAGATACAGCTGGAGAAGAGGAGTACAACGCCATGAGAGACCAACACAGGAAGATAGGTGAAGGCTTCCTCTGTG
TATTTCTATCAATAATAGCAAATCATTTGCAGATGTTAATCTCTACAGGGAGAAGATTAAGCGAGTAAAAGACTCAGATG
ATGTACCCGTGGTGCTTGTC

Alignment

ORF - retro_tbel_2242 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 74.14 %
• Parental protein coverage: 76. %
• Number of stop codons detected: 2
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  MTEYKLVVVGAGGVGKSALT-IQLIQNHFVDEYDPTIEDSYRKPVVIDGETCLLDILNKPGQEEYSAMRD
          MTEYKLVVVG.GG.GKSAL..IQLIQNHFVDEY.PTI.DSY.K.VV.DGETCL.DI....G.EEY.AMRD
Retrocopy MTEYKLVVVGTGGAGKSALK<IQLIQNHFVDEYGPTIADSY*KRVVTDGETCL*DIPDTAGEEEYNAMRD

Parental  QYMRTGEGFLCVF-AINNTKSFEDIHHYREQIKRVKDSEDVPMVLV
          Q....GEGFLCVF..INN.KSF.D...YRE.IKRVKDS.DVP.VLV
Retrocopy QHRKIGEGFLCVF<SINNSKSFADVNLYREKIKRVKDSDDVPVVLV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tupaia belangeri was not studied using RNA-Seq expression data.

ChIP-Seq

Tupaia belangeri was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_tbel_2242 retrocopy.

TSS

Tupaia belangeri was not studied using FANTOM5 data.

Lab

retro_tbel_2242 was not experimentally validated.

Homology

Retrocopy orthology:

Tupaia belangeri does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 12 retrocopies.

Species	Parental gene accession	Retrocopies number
Dipodomys ordii	ENSDORG00000011469	1 retrocopy	retro_dord_520,
Erinaceus europaeus	ENSEEUG00000003058	1 retrocopy	retro_eeur_160,
Homo sapiens	ENSG00000133703	1 retrocopy	retro_hsap_3474,
Macaca mulatta	ENSMMUG00000015381	1 retrocopy	retro_mmul_1766,
Monodelphis domestica	ENSMODG00000017458	1 retrocopy	retro_mdom_153,
Nomascus leucogenys	ENSNLEG00000005266	1 retrocopy	retro_nleu_338,
Tupaia belangeri	ENSTBEG00000003830	2 retrocopies	retro_tbel_2242 , retro_tbel_271,
Tupaia belangeri	ENSTBEG00000013380	4 retrocopies	retro_tbel_2145, retro_tbel_4650, retro_tbel_4658, retro_tbel_613,