RetrogeneDB ID:

retro_tbel_1435

Retrocopy
location
Organism:Treeshrew (Tupaia belangeri)
Coordinates:GeneScaffold_4703:43762..44370(-)
Located in intron of:ENSTBEG00000003269
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:TPM4
Ensembl ID:ENSTBEG00000012927
Aliases:None
Description:tropomyosin 4 [Source:HGNC Symbol;Acc:12013]


Retrocopy-Parental alignment summary:






>retro_tbel_1435
GCAGAAGGTGATGTGGCAGCTCTCAATCGACGCATCCACCTGGTTGAGGAGTTGGACAGGACTCAAAGAAGGCTGGCAAC
AGCCCTGCAGAAGCTGGAGGAGGCAGAAAATGCGGTGGATAAGAGCGAGAGAGGAACAAAGGTGATTGAAAAGTGGGCCA
TGAAATATGAGGAGAAGATGGAGATTCAGGAGATGCAGGTCAAAGAGGCCAAGCACATTTCTCAGGAGGCTGGCCGCAGA
CACGAGGAGGAAGCTCGTTAAGTTGGTCATCCTGGAAGGCGAGCTGGAAGGGACAGAGGAGCGTGTGGAGGTGTCCGAAC
TAAAGTGTGGTGACCTGGAAGAAGAACTCAAGAATGCCACTAATAATCTGAAATCGCTTGAGGCTGCATCTGAAAAGTAT
TCTGAAAAGGAGGACAAATATGAAGAAGTTAAACTTCTTTCTGACAAACTGAAAGAGGCTGAGACCCATGCGAAATTTGC
AGAGAGAACAGTTGCCAAACTGGAAGAGACAACTGATGACCTGGAAGAAAAACTTGCCCAGGCCAAGGAAGAGAACAGCG
GGCTTACATCAGACACTGGATCAGACACTAAATGAACTTAACTGTATA

ORF - retro_tbel_1435 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 84.95 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalAEGDVAALNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMEIQEMQLKE
AEGDVAALNRRI.LVEE.LDR.Q.RLATALQKLEEAE.A.D.SERG.KVIE..AMK.EEKMEIQEMQ.KE
RetrocopyAEGDVAALNRRIHLVEE-LDRTQRRLATALQKLEEAENAVDKSERGTKVIEKWAMKYEEKMEIQEMQVKE
ParentalAKHIAEEADRKYEEVAR-KLVILEGELERAEERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSEKED
AKHI..EA.R..EE.AR.KLVILEGELE..EER.EVSELKCGDLEEELKN.TNNLKSLEAASEKYSEKED
RetrocopyAKHISQEAGRRHEEEAR>KLVILEGELEGTEERVEVSELKCGDLEEELKNATNNLKSLEAASEKYSEKED
ParentalKYEEEIKLLSDKLKEAETRAEFAERTVAKLEKTIDDLEEKLAQAKEEN-VGLHQTLDQTLNELNCI
KY.EE.KLLSDKLKEAET.A.FAERTVAKLE.T.DDLEEKLAQAKEEN..GLHQTLDQTLNELNCI
RetrocopyKY-EEVKLLSDKLKEAETHAKFAERTVAKLEETTDDLEEKLAQAKEEN>AGLHQTLDQTLNELNCI

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide