RetrogeneDB ID: retro_taes_11

Retrocopy location

• Organism: Wheat (Triticum aestivum)
• Coordinates: 1A:216979822..216980950(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: Traes_1AL_C407541EB
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: Traes_7DS_A07A7A4F0
• Aliases: None
• Description: None

Sequence

>retro_taes_11
ATGCAAATCCTCTCGCGCTCGATTACTCGAAGCGTCAGCAGGGTTGCCTCTGCTCTGCCTCGCTGCTGGTTTCCAGCACT
TGCGCGAGGAGATGCTCCACGAAATCAACATCTTGATCGTCTTTTCCTTGAGAAGAGTACACTGAATTGGCTGCGCCAGT
TCTCCATACATGGCGTGAATGAGACGAAGACTAATAATGCAGCAGAGGACAGTGTCCAGACGTTAAACACTAGTTTAACT
GAAGATACATGTTACATGCCGATAATTTCAGGGAGCAGCCACCGTGATGGTGCTATATACAAGAGAGCGGCTTATTGGGA
ACATAATTACTTTTTTGATATCGCTGACCGTACAGAGACTCGGTTGGAGCCAGCGCGTGCATACGATATACCGCGTAACA
TGATGCAGATCTTTTCAATGAAGTTAGCTAAAGCTCCTATCAACAGTGGCTCAATACAGTTATATGGATATATAGCAGCA
CGTGATGAAGTTGATCTAAGACTCAATTATGTTTTCAATCGCAGCAGGGATGATCCCATCATCGTGCAGCAGGGTTCTCT
AATTGAAATGAACGGCCCTAAGAGAGCCATCCTGTTGATATTTGATGTGCTACTTGAGTTTGACATGAGGATCAAGAATG
GGGAGAATGAAGAGGATGATTTACAGCTGATTGATGGAATCTCAGAATTTGACGGTTTACGCATGTCGTGGAGACCGCAC
GAGGTTCGCATTGGTGGAAATTGTGGTGCAGTTGATACGTCTTTTGCACTTGTTCATAGTTCAGTTGAGGCCACAGTACA
AGTTATCATATCAAAAGTGCAGACTGGCTTTGATTTATCTCTCAGTTCTACGATTGCTCTTCTGGAGATGAATAAAGAAT
TCCAGCTCTTCAGTGGAAATATTAGTGAGTCCTGTGGCTTAGGAAGCTTTGTGATTGCTGTCACATGGGATACGCTGATG
AATTTGAAGTTCAAGGTTGATCACGAAGGCTGTAACAATAATATTGAACGCAATTGTTCCTTCAAAGCTAAGTTAAATGG
ACACACCAGCCATCAGCTAAATCTCGAGACTGCCTCAATTTTAGTTAAGGTGACTTGGGCTGTGTTGCCTGCATCGTTGA
GCAATTAA

Alignment

ORF - retro_taes_11 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 60.63 %
• Parental protein coverage: 99.37 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MDKAERMKAAEESNPMVETSAIQDVYYQPIIPGSSHRDGTIYKKRLEWESEYCVDVDDRTETQLEPASWD
          ........AAE.S.....TS...D..Y.PII.GSSHRDG.IYK....WE..Y..D..DRTET.LEPA...
Retrocopy VNETKTNNAAEDSVQTLNTSLTEDTCYMPIISGSSHRDGAIYKRAAYWEHNYFFDIADRTETRLEPARAY

Parental  DMTCEMMQIFSLKLAKSPINSGSMQLYGYIAARDEYDLRLNYLFNRSREDPIVVQQGFLIQMTGPKRGIA
          D....MMQIFS.KLAK.PINSGS.QLYGYIAARDE.DLRLNY.FNRSR.DPI.VQQG.LI.M.GPKR.I.
Retrocopy DIPRNMMQIFSMKLAKAPINSGSIQLYGYIAARDEVDLRLNYVFNRSRDDPIIVQQGSLIEMNGPKRAIL

Parental  FHCDVLLEFGMRIKNGENEGDDTQLIDGMSEFRGLLMPWEPTEIPINGNCATVEMSAALVSNAIAAIVEV
          ...DVLLEF.MRIKNGENE.DD.QLIDG.SEF.GL.M.W.P.E..I.GNC..V..S.ALV.....A.V.V
Retrocopy LIFDVLLEFDMRIKNGENEEDDLQLIDGISEFDGLRMSWRPHEVRIGGNCGAVDTSFALVHSSVEATVQV

Parental  IISEAHGDFDLSLSSIVSVVE-EHEFQLFHGSAGDWCGVRRFVIAVTVNTMLHLKFMLGHRCSNGNIEDT
          IIS.....FDLSLSS.....E...EFQLF.G.....CG...FVIAVT..T...LKF...H...N.NIE..
Retrocopy IISKVQTGFDLSLSSTIALLEMNKEFQLFSGNISESCGLGSFVIAVTWDTLMNLKFKVDHEGCNNNIERN

Parental  CSFKAKLNGHASHQTNLEAASILTKVTWAAWPPEM
          CSFKAKLNGH.SHQ.NLE.ASIL.KVTWA..P...
Retrocopy CSFKAKLNGHTSHQLNLETASILVKVTWAVLPASL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Triticum aestivum was not studied using RNA-Seq expression data.

ChIP-Seq

Triticum aestivum was not studied using ChIP-Seq data.

EST

Triticum aestivum was not studied using EST data.

TSS

Triticum aestivum was not studied using FANTOM5 data.

Lab

retro_taes_11 was not experimentally validated.

Homology

Retrocopy orthology:

Triticum aestivum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Triticum aestivum	Traes_7DS_A07A7A4F0	3 retrocopies	retro_taes_11 , retro_taes_155, retro_taes_165,