RetrogeneDB ID:

retro_slyc_102

Retrocopy
location
Organism:Tomato (Solanum lycopersicum)
Coordinates:SL2.40sc03817:4818..5769(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:Solyc04g080770.2
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_slyc_102
AAAGAACACAATTACGAGAAGGCCGTATTGGTAGGTGTTGTTACACAGCATCAGGATGAGGATAAACTTCAGGAATATAT
GGACGAGCTGGAGTTTTTGGCGTACACCGCAGGAGCGACTGTAGACAGACGCTTTACCCAAAAATTAACACAACCGGATT
CCAAAACATTTATCGGAAGCGGGAAAGCACAGGAAATCAAAGAATATGTAAAAGAAAACGAAATAGGAACCGTCATTTTT
GATGATGAACTTTCGCCGTCTCAGCTTAAAAACCTGGAAAGAGAGCTTGAAGTTAAAATTCTCGACAGAACCAATCTGAT
CCTTGATATTTTTGCCCAGCGTGCCACAACATCATACGCAAGAACCCAAGTGGAACTTGCACAATATCAGTACCTGTTGC
CGCGACTTACAAGAATGTGGACCCACCTTGAACGTCAGAAAGGGGGAATCGGGATGAGAGGTCCGGGAGAAACAGAAATT
GAAACCGATAGACGTATCATCCGAGACCGGATTTCCTTATTGAAAGACAAGCTGAAAACCATCGATAAACAGATGGCTAC
CCAGAGAAATAACCGCGGAAAAGTGGTAAGAGTAGCATTGGTAGGATATACCAATGTCGGAAAATCAACTCTGATGAATG
CGCTTTCAAAATCCGAGGTCTTTGCTGAAAATAAATTATTTGCAACGCTGGATACCACGGTAAGAAAAGTGGTAATCGGA
AACCTTCCGTTTCTGCTTACCGATACCGTAGGATTTATCAGAAAACTTCCTACTCAGCTTGTAGAATCTTTCAAATCTAC
ACTGGATGAGGTGCGTGAAGCGGATCTTTTGATCCACGTGGTGGATATTTCCCACGAAAGTTTTGAAGACCATATTGATT
CGGTTAATCAGATTTTAATGGAAATCAATGCCCATCAAAAGCCAATGATCATGATCTTTAATAAAATCGAT

ORF - retro_slyc_102 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 52.16 %
Parental protein coverage: 59.05 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalKEVFEEKAYLVGVACKGDTEDSFGIEESLKELAQLADTAGLLVVDSTYQKLSSPNPRTYIGSGKVSEIKS
KE...EKA.LVGV......ED.....E...EL..LA.TAG..V.....QKL..P...T.IGSGK..EIK.
RetrocopyKEHNYEKAVLVGVVTQHQDEDK--LQEYMDELEFLAYTAGATVDRRFTQKLTQPDSKTFIGSGKAQEIKE
ParentalAIRAFDVETVIFDDELSPGQLRNLEKAFGGDVRVCDRTALILDIFNQRAATREASLQVSLAQMEYQLPRL
........TVIFDDELSP.QL.NLE......V...DRT.LILDIF.QRA.T..A..QV.LAQ..Y.LPRL
RetrocopyYVKENEIGTVIFDDELSPSQLKNLEREL--EVKILDRTNLILDIFAQRATTSYARTQVELAQYQYLLPRL
ParentalTRMWTHLERQAGG-QVKGMGEKQIEVDKRILRTQIGVLKKELESVRKHRKQYRNRRVSVPVPVVSLVGYT
TRMWTHLERQ.GG....G.GE..IE.D.RI.R..I..LK..L....K.....RN.R..V....V.LVGYT
RetrocopyTRMWTHLERQKGGIGMRGPGETEIETDRRIIRDRISLLKDKLKTIDKQMATQRNNRGKVVR--VALVGYT