RetrogeneDB ID:

retro_sita_33

Retrocopy
location
Organism:Foxtail millet (Setaria italica)
Coordinates:6:27132973..27133936(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:Si014102m.g
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:Si030120m.g
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_sita_33
ATGGCGAGCCTGACGGTGCCGCCGGTGCCTACGTGGCCCCGGCAGGACGCCATCGACCTCCACAGGGCGTTCAAAGGTTT
CGGCTGCGACAGCACGACGGTGATCAACATCCTCGCCCACCGCGACGCGGCGCAGCGCGCGCTGATCCAGCAGGAGTACC
GCGCCGTGTTCAACCAGGACCTCGCCCGCCGCATCGCCTCCGAGCTCAGCGGCCACCACAAGCGCGCCATGCTGCTGTGG
CTCCTGGACCCGGCCTCCCGCGACGCCACCATCCTGAAGCAGGCCCTCACCGGTGACGTCACCGACCTCCGCGCCGCCAC
GGAGGTGGTCTGCTCCCGAACCCCCTCGCAGCTCCAGATCATCCGGCACACCTACCGCGCCCGGTTCGGCTGCTACGTCG
AGCACGACGTCACCGAGCGGACCTCCGGCGACCACCAGCGGCTGCTGCTGGCGTACCTGGCGATCCCGCGCGCGGAGGGG
GCGGCGGCGGTGGACCCGTCGCTGGCGGCGCTGGACGCCCGGGAGCTCTTCAAGGCCGGGGAGCGGCGGCTGGGCACCGA
CGAGCGCGCCTTCATCCGGGTGTTCAGCGAGCGGAGCTGGGCGCACCTGGCGGCGGTGGCGCGGGCGTACCACCACATGT
ACGACCGGTCGCTGGAGCAGGCGGTGAAGGGCGAGACGTCGGGGAACTTCGGGTTCGGCCTCCTCACCGTGCTCCGGTGC
GCCGCCGACAGCCCGGCGAGGTACTTCGCCAAGGTGCTCCACAAGGCGATGAAGGGGCTTGGCACCAGCGACTCGGCGCT
GATCCGGGTGGTGGTGACGCGGGCGGAGGTGGACATGCAGTACATCAAGGCCGAGTACCACAGGATGTACAAGCGCTCCC
TCCCCGACGCCATCCACTCCGAGACGTCCGGCAACTACCGCACCTTCCTCCTCTCCCTTGTCGGACGCGACAGGACCTAC
TGA

ORF - retro_sita_33 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 70.79 %
Parental protein coverage: 80.46 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMASLTLPPAPPNPRQDAIDLHKAFKGFGCDSTAVINILTHRDSVQRGLIQQEYRAMYHEELSQRISSELS
MASLT.PP.P..PRQDAIDLH.AFKGFGCDST.VINIL.HRD..QR.LIQQEYRA.....L..RI.SELS
RetrocopyMASLTVPPVPTWPRQDAIDLHRAFKGFGCDSTTVINILAHRDAAQRALIQQEYRAVFNQDLARRIASELS
ParentalGNHKKAMLLWILDPAGRDATVLREALSGDTMDLRAATEIICSRTPSQLQIMKQTYFARFGTYLEHDIGHH
G.HK.AMLLW.LDPA.RDAT.L..AL.GD..DLRAATE..CSRTPSQLQI...TY.ARFG.Y.EHD....
RetrocopyGHHKRAMLLWLLDPASRDATILKQALTGDVTDLRAATEVVCSRTPSQLQIIRHTYRARFGCYVEHDVTER
ParentalTSGDHQKILLAYMGIPRYEG-PEVDPTIVTHDAKDLYKAGEKRLGTDEKTFIRIFTERSWAHIASVSSAY
TSGDHQ..LLAY..IPR.EG...VDP.....DA..L.KAGE.RLGTDE..FIR.F.ERSWAH.A.V..AY
RetrocopyTSGDHQRLLLAYLAIPRAEGAAAVDPSLAALDARELFKAGERRLGTDERAFIRVFSERSWAHLAAVARAY