RetrogeneDB ID:

retro_shar_809

Retrocopy
location
Organism:Tasmanian devil (Sarcophilus harrisii)
Coordinates:GL865180.1:87062..87423(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:CENPH
Ensembl ID:ENSSHAG00000007822
Aliases:None
Description:centromere protein H [Source:HGNC Symbol;Acc:17268]


Retrocopy-Parental alignment summary:






>retro_shar_809
ATGGTTCAACTGCTGCTCAGAATGAAGAAGCGAATTAAAGGACAACAACTGGACTAGAAGGCGGGGGGCGGAGCAAGTTA
AGTGAGTGAGTCCTGCGGGGGAATGTGCAGAAGATAGCTGGATTCAAAGGCTTGAAGATCTAGAAAGAAAATAGGAGAAA
TGAAGATTAGTTAGAAGCAAAACCTGTAGCTTTACAAAGGATCCGGGTGGCTCCCGCCTTGGAGAAAAAGCTGGGAAAAG
GGGATGGTGATTTTGAACCAATCTTGGCAATTATGAAAAACATTTTAACTGTTAATGGTTCAATCCTCAAACCCAGCAGC
TAACTCGGGACTTGGAGGAGAAAATCCTGGAAGTTAAGAAG

ORF - retro_shar_809 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 64.8 %
Parental protein coverage: 57.69 %
Number of stop codons detected: 2
Number of frameshifts detected 4


Retrocopy - Parental Gene Alignment:

ParentalMVRQLLRLK-NQIKQQLLEYKAEVEASK-MSPTEECTEDNLIQKIEDLERKME-DMKIE-LEAKTLALKR
MV..LLR.K....K..........E..K..SP..EC.ED..IQ..EDLERK.E..MKI..LEAK..AL.R
RetrocopyMVQLLLRMK>SELKDNNWTRRRGAEQVK*VSPAGECAEDSWIQRLEDLERK*E<EMKIS<LEAKPVALQR
ParentalIQVAHALEKKLEKKDADFEPILAIMKNILTVNGSILK-AQQLTRDLEEKMLEVKK
I.VA.ALEKKL.K.D.DFEPILAIMKNILTVNGSILK..QQLTRDLEEK.LEVKK
RetrocopyIRVAPALEKKLGKGDGDFEPILAIMKNILTVNGSILK<TQQLTRDLEEKILEVKK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Sarcophilus harrisii was not studied using RNA-Seq expression data.