RetrogeneDB ID:

retro_shar_73

Retrocopy
location
Organism:Tasmanian devil (Sarcophilus harrisii)
Coordinates:GL834710.1:4664761..4667938(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSSHAG00000018917
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:ATP2B2
Ensembl ID:ENSSHAG00000017272
Aliases:None
Description:ATPase, Ca++ transporting, plasma membrane 2 [Source:HGNC Symbol;Acc:815]


Retrocopy-Parental alignment summary:






>retro_shar_73
GTGAGCTTAAGAGACCTGGAGCAGCTGATGAAACTACGGAGCTTGGAAGCGCTGGAGAGACTGGAGGGGCACTTCGGAGA
CGTGTCGGGGCTGTGTCTGCAGCTGCAGACGGACCCCGAGCTCGGACTCCCCTTAGATCCCGGCGAGCTAAACCGCAGGC
GGGAGCAGTTTGGCACCAATGAGGTGCCCAAGCCCCGGAGCAGATATTTCTTGGAGCTGGTGTGGGACGCTCTGCAGAAC
ACTACTCTAATCTTTCTGGAGGTGGCAGCTGTCCTGTCGCTGGCCCTGGCCTTCTATGAGCCCAAGGTCAGCGGAGACAC
CAAAGGCTGCTATGTCGGCGGGGTCTCCCCGGAGGAAGAGGATAACAAGGTGGTGCGCTGGCTGGAAGGCGCAGTCCTGC
TGATGTCGGTGGCCTTGGTAGTGCTCATCACAGCCTTACACGACTGGAACAAGGAGAAGCAGTTCAGGAATCTGGAGGAG
GGAGTGAGCCTGAGTCAGAAGGGCAAAGTGATGAGGAATGGCCAGATCCTGGAGGTCCCCGTCAAGGACATCGTGGTGGG
TGACGTGGTCCCGGTGTCCTATGGGGACATGCTGCCTGCGGACGGTGTGCTGCTCCAGGTGCAGAACTTAAAAATGAATG
AGAGCTCCTTGACTGGAGAGTTGAACATGGTGAGGAAGTCCCTGGATCTTGACCCAATTCTTCTGTCTGGGACCTATGTG
ATGGAGGGCTGGGGCAAAATCCTCGTGACTGCTGTAGGGCCCAACTCACAAATTGGGATCATCCTGACTTTGCTCGCTGC
CAATGCTCAGGAAGGAAGGCCGGAAGAGCAGAGAAAGGTTCCGGAGTGGGCCATTCACGGCAAGAGCATAATAAAACCTA
AACATTACTCCTCCAAAGCAAAGTCCGTGCTGCAAAAGAAACTGACAAAATTAGCCATTCTGCTCGGGAAGTGCGGAATG
CTCATGGCCACAGTCACAGTGATTACTCTTGTGACCTATTTTGTGATTAACACTTTTGTGATTGAGAGGCAAAAATGGAC
TTATGGTTGTACTTCGGTTTATATCCAATACTTTATTAAATTTTTCATTATTGGAATAACAATCTTGGTGGTGACTGTCC
CTGAAAGTCTTCCACTTGCAGTTACACTATCTTTGGCTTACGCAGTAAAGAAAATGATGAAAGACAAAAATCTGGTAAGG
CATTTGGATGCTTGTGAGACAATTGGAAATGTCACAACCATTTGCTTAGACAAAACTGGAACACTGACCATGAACAGAAT
GACTGTGGTCCAGGCTTATATTGGGGAGAATCATTACCAAGAGCTCCCCAAAAGCAATTCCATCCCAGAGCCTATTCTGG
GGTACCTTTTAAAAGGTATCGCTGTTAATTGTTCTTATTCTTCCAAGGTCATTTTCCCCAAAGATGGTAAGAAGTTGGTA
CAACAAATTGGCAATAAGACCGAATGTGCTTTATTGGGATTTCTTCTGCATTTGGAATTGGATTATGAGGCAGAAAGAAA
CAAAATACCACAGCAGAATTTGTATAAGGTATATACCTTTAACTCAGATAGAAAATGCATGAGTACTGTATTAAAATTGC
CCAATGGGGGTTTCCAGATGTTCAGTAAAGGTCCTTCAGAAACAGTATTAGATAAGTGTTGTAAAATCCTGAACAAAATG
GGAAAGCCTGTGGAACTGACAGAAACCAAAAAAAGAGAAATTGTTCAAAATGTCATCGAGCCAATGAGTTCTGAAGGACT
TCAGATCATTTGTTTGGCCTTCAGAGAATTCTCAGATAAAGAAAAAGAACCAGACTGGGAAACTGAAGAGAATATCATCA
CAAAACTTACTTGCATTGCCGTGGTGGGCATTGAAGATCCTGTTAGACCTGAGATTCCAAGTGCCATTAGGAAATGCCAG
CAAGCTGGAATCACTGTCCGAATGATCACTGGGGATAATCTCAATACCGCACGGGCTGTAGCATTGAAATGTGGCATTTT
GAACCTCCGTGACAATTATTTGTCCCTAGAAGGTAGAGACTTCTGGAGGCTAATACATGATAAACACGGGAAGATCGAAC
AGAAGCTTTTAGATAGAATTTGGCCCAGACTTCGTGTGCTTGCCAGTTCTTCCCCCATTGAAAAATATGCACTTATAAAA
GGCATAATTAACAGTGATGCTTTGGGAGTGAAGCAGGTTGTAGCTGTAACAGGTGATGGTACTAATGATGGCCCAGTGTT
AAAAGTAGCAGATGTTGGGTTTGCCATGGACATCATTGGAACAGATATCGCTAGAGAAGCGTCAGACATCATTTTAATGG
ATGACAACTTCACAAGCATTATGAAAGCGATTATGTGGGGGAGGAACCTTTATGACAACATCTCCAGGTTCCTCCAATTT
CAGCTGACTGTCAGCGTAGTGTCAACGGTTGTGGTATTTATAGGAGCATGTGTGACACAGGATTCGCCACTTAATGCAGT
ACAGATGCTGTGGATCAACCTCATAATGGATGCATTTGCTTCCCTTGCCTTAGCCACTGAAAAACCAACTGAGGCACTTT
TGCTAAGACCTTATGGAAGGAAGGAGTACCTCCTATCCAGTTCCATGGTAAAGTACATTTTGGGCCATGCAGCCTACCAG
CTTACAGTCACTTTTGTTCTTATGTTTGTTGGTGAAGAGCTCTTTGGTTTTGAGAGTGGAAGAAAAGCTCTTCTCCATGC
TCCTCCTTCCACCCACTATACGATGGTATTCAACACTTTCGTTATGATGCAGCTTTTCAATGAAATTAATGCTCGAAAGA
TTCATGGTGAGAGAAATGTCTTTGAAGGGATCCTTGGCAATAATATCTTTTGCATCATTGTGGGGGGAACATTTGCCTTA
CAGTTCTTTATTGTACAATTTGGTGGAAATGTTTTCAGTTGCACCAACCTTAGTCCAGACTTATGGCTGTGGTGCATTTT
CCTAGGAGCAGGGGTATTAGTGTGGGGTCAGTTGGTAACCACCATTCCCAACAAGTGTGTGGAACCCCTTATAAGGTTTA
TGGGTGGCAGAGCAGAAGAAAAGGCTGATACTGTCTGCCCTATAGCATCAATGACTGAGGAACTATTATGGGTTCAGAAC
CTAAGCAGAATCCAGAATCAGAAAAGACTAATGAAGTCATATCATTCTTGCTTTCAC

ORF - retro_shar_73 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 63.96 %
Parental protein coverage: 58.89 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalKKANMHKKEKSVLQGKLTKLAVQIGKAGLVMSAITVIILVLYFTVDTFVVNKKPWLPECTPVYVQYFVKF
K......K.KSVLQ.KLTKLA...GK.G..M...TVI.LV.YF...TFV.....W...CT.VY.QYF.KF
RetrocopyKPKHYSSKAKSVLQKKLTKLAILLGKCGMLMATVTVITLVTYFVINTFVIERQKWTYGCTSVYIQYFIKF
ParentalFIIGVTVLVVAVPEGLPLAVTISLAYSVKKMMKDNNLVRHLDACETMGNATAICSDKTGTLTTNRMTVVQ
FIIG.T.LVV.VPE.LPLAVT.SLAY.VKKMMKD.NLVRHLDACET.GN.T.IC.DKTGTLT.NRMTVVQ
RetrocopyFIIGITILVVTVPESLPLAVTLSLAYAVKKMMKDKNLVRHLDACETIGNVTTICLDKTGTLTMNRMTVVQ
ParentalAYIGDVHYKEIPDPSVINSQTMELLVNAIAINSAYTTKILPPEKEGALPRQVGNKTECGLLGFVLDLKQD
AYIG..HY.E.P....I.......L...IA.N..Y..K...P.....L..Q.GNKTEC.LLGF.L.L..D
RetrocopyAYIGENHYQELPKSNSIPEPILGYLLKGIAVNCSYSSKVIFPKDGKKLVQQIGNKTECALLGFLLHLELD
ParentalYEPVRSQMPEEKLYKVYTFNSVRKSMSTVIKMPDESFRMYSKGASEIVLKKCCKILSASGEARVFRPRDR
YE..R...P...LYKVYTFNS.RK.MSTV.K.P...F.M.SKG.SE.VL.KCCKIL...G..........
RetrocopyYEAERNKIPQQNLYKVYTFNSDRKCMSTVLKLPNGGFQMFSKGPSETVLDKCCKILNKMGKPVELTETKK
ParentalDEMVKKVIEPMACDGLRTICVAYRDFPSSP-EPDWENENDILNDLTCICVVGIEDPVRPEVPEAIRKCQR
.E.V..VIEPM...GL..IC.A.R.F.....EPDWE.E..I...LTCI.VVGIEDPVRPE.P.AIRKCQ.
RetrocopyREIVQNVIEPMSSEGLQIICLAFREFSDKEKEPDWETEENIITKLTCIAVVGIEDPVRPEIPSAIRKCQQ
ParentalAGITVRMVTGDNINTARAIAIKCGIIHPGEDFLCIEGKEFNRRIRNEKGEIEQERIDKIWPKLRVLARSS
AGITVRM.TGDN.NTARA.A.KCGI.......L..EG..F.R.I....G.IEQ...D.IWP.LRVLA.SS
RetrocopyAGITVRMITGDNLNTARAVALKCGILNLRDNYLSLEGRDFWRLIHDKHGKIEQKLLDRIWPRLRVLASSS
ParentalPTDKHTLVKGIIDSTHTEQRQVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDNFSSIV
P..K..L.KGII.S......QVVAVTGDGTNDGP.LK.ADVGFAM.I.GTD.A.EASDIIL.DDNF.SI.
RetrocopyPIEKYALIKGIINSDALGVKQVVAVTGDGTNDGPVLKVADVGFAMDIIGTDIAREASDIILMDDNFTSIM
ParentalKAVMWGRNVYDSISKFLQFQLTVNVVAVIVAFTGACITQDSPLKAVQMLWVNLIMDTFASLALATEPPTE
KA.MWGRN.YD.IS.FLQFQLTV.VV...V.F.GAC.TQDSPL.AVQMLW.NLIMD.FASLALATE.PTE
RetrocopyKAIMWGRNLYDNISRFLQFQLTVSVVSTVVVFIGACVTQDSPLNAVQMLWINLIMDAFASLALATEKPTE
ParentalSLLLRKPYGRNKPLISRTMMKNILGHAVYQLTLIFTLLFVGEKMFMIDSGRNAPLHSPPSEHYTIIFNTF
.LLLR.PYGR...L.S..M.K.ILGHA.YQLT..F.L.FVGE..F...SGR.A.LH.PPS.HYT..FNTF
RetrocopyALLLR-PYGRKEYLLSSSMVKYILGHAAYQLTVTFVLMFVGEELFGFESGRKALLHAPPSTHYTMVFNTF
ParentalVMMQLFNEINARKIHGERNVFDGIFRNPIFCTIVLGTFAIQIVIVQFGGKPFSCSPLQLDQWMWCIFIGL
VMMQLFNEINARKIHGERNVF.GI..N.IFC.IV.GTFA.Q..IVQFGG..FSC..L..D.W.WCIF.G.
RetrocopyVMMQLFNEINARKIHGERNVFEGILGNNIFCIIVGGTFALQFFIVQFGGNVFSCTNLSPDLWLWCIFLGA
ParentalGELVWGQIIATIP
G.LVWGQ...TIP
RetrocopyGVLVWGQLVTTIP

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Sarcophilus harrisii was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Sarcophilus harrisii was not studied using ChIP-Seq data.

EST - click to see more details

Sarcophilus harrisii was not studied using EST data.

TSS - click to see more details

Sarcophilus harrisii was not studied using FANTOM5 data.

Lab - click to see more details

retro_shar_73 was not experimentally validated.

Retrocopy orthology:
Sarcophilus harrisii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Sarcophilus harrisii ENSSHAG00000017272 1 retrocopy
retro_shar_73 ,




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