RetrogeneDB ID:

retro_shar_723

Retrocopy
location
Organism:Tasmanian devil (Sarcophilus harrisii)
Coordinates:GL861617.1:1083713..1083901(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:CCDC25
Ensembl ID:ENSSHAG00000018434
Aliases:None
Description:coiled-coil domain containing 25 [Source:HGNC Symbol;Acc:25591]


Retrocopy-Parental alignment summary:






>retro_shar_723
ATGGGAAAGGATAAACATGAAAATGAAGATCTAATAAAGCACGGTTGGCCAGAAGATATTTGGCATTATGTTGACAAACT
TTCTTCAGTTCACATATATATTTTGGTTACACCAGGGAGAGGGCAGAAGACATTTCAAAGAAAATGATGATGAACTATGC
ACATGTTGTGAGAGCCAAGAGTATTCAA

ORF - retro_shar_723 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 65.62 %
Parental protein coverage: 85.14 %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMGKDKYENEDLIKYGWPEDIWFHVDKLSSAHVYLRLHKG-ERIEDIPKEVLMDCAHLVKANSIQ
MGKDK.ENEDLIK.GWPEDIW..VDKLSS.H.Y.....G.ER.EDI.K...M..AH.V.A.SIQ
RetrocopyMGKDKHENEDLIKHGWPEDIWHYVDKLSSVHIYILVTPG<ERAEDISKKMMMNYAHVVRAKSIQ

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Sarcophilus harrisii was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Sarcophilus harrisii was not studied using ChIP-Seq data.