RetrogeneDB ID:

retro_shar_711

Retrocopy
location
Organism:Tasmanian devil (Sarcophilus harrisii)
Coordinates:GL861577.1:247609..248015(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ATP5H
Ensembl ID:ENSSHAG00000018708
Aliases:None
Description:ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d [Source:HGNC Symbol;Acc:845]


Retrocopy-Parental alignment summary:






>retro_shar_711
AAAGTCATTGCTAATGCCTTGAAATCTTTTGATGAAAATCTTACTACCATATTGGCTACACTGCCTGAGAAGCCAGAAAT
GATCCACTGGACTTACTACAAAGAGAATGTAGCCAAGCCTAGCCTTGTGAATTAGTTTGAAAAGTTTAATGAGCTGAAGA
TTTCTATGCCAGAAGATAAATTCACTGCCCTAACGGATGCAGAAGAAAAGAAAGATGGTAAAAATAGATGTTGATTTTGT
GAAAGTTTCATATGCTAGCATTACAAAACTTCAGAAAGAGATTGAAAATATCAAGAATGTAATTCCTTTTGAACAGATGA
CTGTTGAGAATTTGAACAAATCCTTCCCTCAAACCAGACTGGATAAGACGTATCTTTATTGGTCCCAACAGCCAATAGAA
AACCTC

ORF - retro_shar_711 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 63.04 %
Parental protein coverage: 85.09 %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalKAIANALKSHNEYLTNRLTALPEKPQVINWAYYKQNIAKPGLVDEFEKKYNELKIPVPEDKYTALVDAEE
K.IANALKS..E.LT..L..LPEKP..I.W.YYK.N.AKP.LV..FE.K.NELKI..PEDK.TAL.DAEE
RetrocopyKVIANALKSFDENLTTILATLPEKPEMIHWTYYKENVAKPSLVN*FE-KFNELKISMPEDKFTALTDAEE
ParentalQED-AKFGAELVKASNARIAELQKDMDKIKNIIPFEQMTVEDLNQAFPHTRLDKKNYPYWPHQPIENL
..D..K.....VK.S.A.I..LQK....IKN.IPFEQMTVE.LN..FP.TRLD.K.Y.YW..QPIENL
RetrocopyKKD>VKIDVDFVKVSYASITKLQKEIENIKNVIPFEQMTVENLNKSFPQTRLD-KTYLYWSQQPIENL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Sarcophilus harrisii was not studied using RNA-Seq expression data.