RetrogeneDB ID:

retro_shar_620

Retrocopy
location
Organism:Tasmanian devil (Sarcophilus harrisii)
Coordinates:GL856803.1:749816..750186(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:C1QBP
Ensembl ID:ENSSHAG00000002441
Aliases:None
Description:complement component 1, q subcomponent binding protein [Source:HGNC Symbol;Acc:1243]


Retrocopy-Parental alignment summary:






>retro_shar_620
GAAGAGACTGAATTTATATCAATCCCAAACTTTGTGATGGAGATTGTAATGGATGAAACCAAGAAAGCCCTTGTATTGAA
CTGCCACTATCTGGAGGACAAGGTTCAACAGGAAGAAAGGGATGAAAGTGACATTTTTTCCATCTGGGCAGTTAGCTTTT
AGCTCACCAGAGAATCCATCTGGAAGGACACAGACTACATGATGAATATACATCCCTTGGATTGAGCCCTGTATGACCCT
TTAATGGGCTTCCTGGCTGGTCAAGGGATGGAGAATACATTTCAAATGAAGTTACTGATCTCAGCCTGGCATCAGAAACC
AGGAATAAATCAACTTTCTGGAAGAAATTAAAGAGTTTGTCAAATGCCAG

ORF - retro_shar_620 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 59.52 %
Parental protein coverage: 54.15 %
Number of stop codons detected: 3
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalQEPELTSTPNFVVEVIKNDTQKALVLDCHYPEDEVGQEEEEESDIFSIREVSFQPTSESDWKDTNYTLNT
.E.E..S.PNFV.E.....T.KALVL.CHY.ED.V.QEE..ESDIFSI..VSF..T.ES.WKDT.Y..N.
RetrocopyEETEFISIPNFVMEIVMDETKKALVLNCHYLEDKVQQEERDESDIFSIWAVSF*LTRESIWKDTDYMMNI
ParentalDSLDWALYDHLMDFLADRGVDNTF-ADELIELSTALE-HQEYINFLEDLKGFVKCQ
..LD.ALYD.LM.FLA..G..NTF...E...LS.A.E..QE.INFLE..K.FVKCQ
RetrocopyHPLD*ALYDPLMGFLAGQGMENTF<SNEVTDLSLASE<NQE*INFLEEIKEFVKCQ

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Sarcophilus harrisii was not studied using RNA-Seq expression data.