RetrogeneDB ID:

retro_shar_114

Retrocopy
location
Organism:Tasmanian devil (Sarcophilus harrisii)
Coordinates:GL856958.1:315666..316962(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSSHAG00000007430
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:EHD3
Ensembl ID:ENSSHAG00000013011
Aliases:None
Description:EH-domain containing 3 [Source:HGNC Symbol;Acc:3244]


Retrocopy-Parental alignment summary:






>retro_shar_114
ATGTTCAAGTCGACCAAGGAATCAGACCGTAGGAAGTCTTATCTCTTCATGTCTGTGGCCCAGAGATTGGGACAACTGTA
TTTGGACAAGCTGCTGCCGCTGGAGGAAGCCTATCACTTTGACAGGTTCCACTCTCCCTCGCTCTTGGAGGCCGACTTTG
ATAGCAAGCCCATGGTACTGCTCATGGGCCAGTACAGCACGGGCAAGACCACCTTTGTCAGTTACCTCCTCGAGCAGGAA
TTCCCGTGCATGCGCATTGGCCCCGAGCCCACCACGGATGGCTTCATTGTCCTCATGCATGGTGAGGTTGAGAACGTGTT
GCCAGGCAATGTGGCTGTGGTGGACAGACGCTTTCCCTTCCGCAACCTCACCAACTTCGGCAATGCCTTCCTCAACCGTT
TCGTGTGTGTCCAGCTCCCCAACGAGGTCCTGGAAAGTATCAGCATCATTGACACCCCAGGAATCCTTGCTGGAGAGAAA
CAACGGGTCAGCAGAGGTTATGATTTTGCGGGGGTCCTTCAGTGGTTTGCTGAACGAGTGGACCTTATCATCATGCTCTT
TGATGCTCATAAACTGGACATCTCGGATGAGCTCGCAGAAGCAATCCGGTCTCTCAAGAACTATGAAGACAAAATACGCG
TGGTGTTGAACAAGGCTGACCAAATAGGAACTCAGCAGCTGATGAGGGTCTATGGGGCTCTCATGTGGTCCCTGGGGAAG
ATTGTTACTGCCCCTGAAGTGATGAGGGTATATATAGGGTCCTTCTGGTCTAAGCCCTTTGTGAATGATGACAACAGCAA
GCTCTTTGAAGCAGAGGCTATGGATCTCTTTAAGGATATTCAGAAGTTGCCCCATTATACCACGATTAGAAAAATGAATG
ATTTGATTAAGCGAGCCAGACTGGCTATGGTCCATGGCTATATCATCAGCACCCTCAAGAAAGAGATGCCCATGTTTGGT
AAGGAAAGCAAAAAAAAGGAGCTGCTCAATAACTTGCAAAATGTGTACCAGAAAATTGAACGAGAATATCGTGTTTCTCC
TGGAGATTTCCCAAGCATCCCAAAGATGCAAGAACTGCTTCAGGGTCATGATTTCTCTAAGTTTCAGAACTTGAAGCCCA
AGCTCTTTGAAAACCTGGAACAGATGCTCTCCAAAGATATAGCTCGATTGATGTTTATGATAAAAGAAGAAGAGGCTGCT
GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCCCAGGCTGCTGCCATTGTGGAGGAGACCTCAGGGGCTCTGGTTATGCC
TACTGTGACACTATGA

ORF - retro_shar_114 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 69.08 %
Parental protein coverage: 74.95 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMFSWLGHDDRRRKDPEVFQTVSEGLKKLYKTKLLPLEEYYRFHEFHSPALEDADFDNKPMVLLVGQYSTG
MF......DRR......F..V...L..LY..KLLPLEE.Y.F..FHSP.L..ADFD.KPMVLL.GQYSTG
RetrocopyMFKSTKESDRRKS--YLFMSVAQRLGQLYLDKLLPLEEAYHFDRFHSPSLLEADFDSKPMVLLMGQYSTG
ParentalKTTFIRYLLEQDFPGMRIGPEPTTDSFIAVMQGDVEGIIPGNALVVDPKKPFRKLNAFGNAFLNRFVCAQ
KTTF..YLLEQ.FP.MRIGPEPTTD.FI..M.G.VE...PGN..VVD...PFR.L..FGNAFLNRFVC.Q
RetrocopyKTTFVSYLLEQEFPCMRIGPEPTTDGFIVLMHGEVENVLPGNVAVVDRRFPFRNLTNFGNAFLNRFVCVQ
ParentalLPNAVLESISVIDTPGILSGEKQRISRGYDFAAVLEWFAERVDRIILLFDAHKLDISDEFSEVIKALKNH
LPN.VLESIS.IDTPGIL.GEKQR.SRGYDFA.VL.WFAERVD.II.LFDAHKLDISDE..E.I..LKN.
RetrocopyLPNEVLESISIIDTPGILAGEKQRVSRGYDFAGVLQWFAERVDLIIMLFDAHKLDISDELAEAIRSLKNY