RetrogeneDB ID:

retro_sbic_48

Retrocopy
location
Organism:Sorghum (Sorghum bicolor)
Coordinates:1:73435603..73436965(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:Sb01g050390
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:Sb01g029510
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_sbic_48
ATGGCCATGCCGCCGCCGCGCTCTCTCCGCGTCGCCGTCATCGGTGCGGGAGCCGCGGGGCTGGCCGCCGCGCGCGAGCT
GCGGCGCGAGGGCCACGCGACCGTCGTGTTCGAGCGCGGCCACGCAGTCGGGGGCACCTGGCTCTACGACCACCGCAGCA
GCAGCATGTACGCGTCCCTGCGCACCAACCTGCCACGCGAGATCATGGGCTTCCTCGACTTCCCCTTCGCCGCCGCTTCG
GACTCCGTCGACGCGCGCAGGTTCCCTCGCCACCAGGAGGTGCTGCGCTACATCCAGGCCTTCGCGCGCCGGTTCCACCT
TGACGGCCTCGTCCGCCTCCGCACGGAGGTGCTCGCCGTCACCACCAAGGACGACGACGAGGGGAGCAGCTGGAGGGTGA
GGTGGCGCCGGAACGCAGCCGCCGCCGGTGAGCAGGAGGAGGAGGAGGAGGAGGTGTTCGACGCCGTCGTGGTCTGCAAC
GGCCACTACACGGAGCCGCGAACCGCCGCCGACGACATCCCCGGCCTGGACGCCTGGCCGCCGGGCAAGCAGATGCACAG
CCACAGCTACCGCGTGCCGGGCCCGTTCGCGGACCAGGTCGTGGTCATAGTCGGTGCCAGCAACAGCGGCGCCGACATCT
CCAGGGAAATCGCCGGCGTGGCCAGGGAGGTGCACATGGCCGACAGATGGGCCCCCGCCGCCACCTGCCGGAGGCTCCCC
GGCTATCGCAACCTCTGGCTCCGCTCCATGGTGGAGCGTGCCGACGCGGACGGCACCACCGTCGTGTTCCGAGACGGCAG
CTCCGTCAGAGCGGACGTCGTCATGCACTGCACCGGATACAAGTACAGCTTCCCCTTCCTCCTGACGGCGGCGGGCGATG
GCGATACCGCGGTCGTCTCCGTGGATGACAACCGCATCCACCCGCTGTACAAGCACGTGTTCGTGCCTCAGCTGGCTCCC
CACCTCGCCTTCATCGGCCTGCCCTTCAAGGTGATCCCGTTCCCGATGTTCCAGCTGCAGGCCAGCTGGGTCGCCGGCGC
TCTGTCGGGCCGGATCCAGCTCCCGTCGGAGGAGGAGATGATGGAAGACGTGAGGGCGCTTTACTCGGAGCTGGAGGTCA
TGGGATGGCCCGTCAGGTACACGCACTGCATGAAGCACAGCCAGTTCGAGTACGACGAGTGGCTGGCGGAGCAGTGCCAG
TGCGGCGGGGAAGCCGGCACACGCACAGTGGAGGAGTGGAGGAAGGACATGTTCAACGCCACCAGGAAGAAGAAGCTCCA
GTGCCCGGAGACGTACAGAGACGAGTGGGACGATCACCATTTGCTGGAACAAGCGTACCAAGACTTCAACAATTACTTGT
AA

ORF - retro_sbic_48 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 64. %
Parental protein coverage: 75.28 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalSSLYASLRTNLPRETMGFLDFPFAAGAAAAGSPRDPRRFPGHEEVLRYLEAFARRFDLLRLVRFETEVLS
SS.YASLRTNLPRE.MGFLDFPF....AAA....D.RRFP.H.EVLRY..AFARRF.L..LVR..TEVL.
RetrocopySSMYASLRTNLPREIMGFLDFPF----AAASDSVDARRFPRHQEVLRYIQAFARRFHLDGLVRLRTEVLA
ParentalVR-REDGGGGRWAVTSRK----LGEKGSGQEEFYDAVVVCNGHYTEPRIAV--IPGVDAW-PGKQMHSHN
V....D..G..W.V..R......GE.....EE..DAVVVCNGHYTEPR.A...IPG.DAW.PGKQMHSH.
RetrocopyVTTKDDDEGSSWRVRWRRNAAAAGEQEEEEEEVFDAVVVCNGHYTEPRTAADDIPGLDAWPPGKQMHSHS