RetrogeneDB ID: retro_sara_751

Retrocopy location

• Organism: Shrew (Sorex araneus)
• Coordinates: scaffold_67861:3474..4818(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSSARG00000000386
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: CNOT2
• Ensembl ID: ENSSARG00000001038
• Aliases: None
• Description: CCR4-NOT transcription complex, subunit 2 [Source:HGNC Symbol;Acc:7878]

Sequence

>retro_sara_751
GCACTCGGCCTTCCAATGAGGGGACTGAGCAACAATACCCCTCAATTAAATTGCAGCTTATCACAAGGCACTCAGTTACC
GAACCACATCACGCCAACAACAGGGGTGCCAACAATGTCACTTCCCACGCCTCCATCTGCAAGCAGGGATATTTTGCCCA
TGAATCCTAGGACTATGATGAACCACTCCCAGCTTGGTCAGGACATGGGAATTCCTAGCAGGACAAATAGCATGAGCAGT
TCAGGGGTAGGTAGCCCTGACAGAAGCTCGCCAAGCATAATATATATGCCAAAGCATCAGCCTTCTCGACAGCCTTTTAC
TGTGAACAATATGTCTGGATTTGGAATGAACAGGAATCAGGCACTTGGAATGAATGACTCCTTATCAAGTAACATTTTTA
ATGAAACAGATGGAAGTGAAAATGTGACAGGATTGGACCTTTCAGATTTTCCAGCATTAGCTAAACAAAACAGAAGGGAA
GGAAGCAGTAATCCAACTCCATTAATAAACCCCTTGGCTGGAAGAGCTTCTTATGCTGAAATGGTAGCAAAACCAGCAAA
TGAGCAATCCCAGGACTTCTCAATACCCAATGAAGATTGTCTGGCATTACCTGATTCCAGCAATAAAGATCCAACATCAA
GTAATGATGACAGTAAATCTAATTTGAATACATCTGGCAAGACAACATCAAGTTCTGATGGACCCAAATTTCCTGAAAAT
AAAAGTTCAACACCACAAAATAATAACCAGCAAAAGAAAGGGACACAGGTGTTACTTGATGGTCAGGTTTTTAACATTCC
TCAAGGGATGGTGACAGACCAATTTGGAATAATTGGCCTATTAACATTTATCAGGGAAGCAGAGACAGACCCAGGGATGG
CACATCTTGCAACAGGAAGAGACTTAACAACATTAGGCTTCAATATGATCTCTTCTGAAAATCTCTACCCCAAATTTGCA
TCACCCTGGGCATCTTCACCTTGTCAACCTCAAGACATAGACTTTCATGTTCCACCTGAATATTTAACGAACATTCACAT
TAGGGATAAGCTGGCTAAAATAAAATTTGGCCGATATGGAGAAGATCTTCTCTTCTATCTCTATTATATGAACGGAGGAG
ACGTATTACAACATTTAGCTGCAGTTGAGCTTTTTAACCATGGTTGGAGATACCACAAAGAAGAACGAGTGTGGATCACC
AGGGCACCAGGCATGGAGCCAACAATGAAAACCAATACATATGAGAGGGGAACGTATTACTTCTTTGACTGTCTTAACTG
GATGAAAGTAGCTAAGGAGTTCCATCTGGAATATGATAAATTAGAAGGACGGCCTCATGTGCCA

Alignment

ORF - retro_sara_751 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 87.28 %
• Parental protein coverage: 82.96 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  ALGLPMRGMSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQVGQGIG
          ALGLPMRG.SNNTPQLN.SLSQGTQLP.H.TPTTGVPTMSL.TPPS.SR.ILPMNPR.MMNHSQ.GQ..G
Retrocopy ALGLPMRGLSNNTPQLNCSLSQGTQLPNHITPTTGVPTMSLPTPPSASRDILPMNPRTMMNHSQLGQDMG

Parental  IPSRTNSMSSSGLGSPNRSSPSIICMPKQQPSRQPFTVNSMSGFGMNRNQAFGMNNSLSSNIFNGTDGSE
          IPSRTNSMSSSG.GSP.RSSPSII.MPK.QPSRQPFTVN.MSGFGMNRNQA.GMN.SLSSNIFN.TDGSE
Retrocopy IPSRTNSMSSSGVGSPDRSSPSIIYMPKHQPSRQPFTVNNMSGFGMNRNQALGMNDSLSSNIFNETDGSE

Parental  NVTGLDLSDFPALADRNRREGSSNPTPLINPLAGRAPYVGMVTKPANEQSQDFSIHNEDFPALPGSSYKD
          NVTGLDLSDFPALA..NRREGSSNPTPLINPLAGRA.Y..MV.KPANEQSQDFSI.NED..ALP.SS.KD
Retrocopy NVTGLDLSDFPALAKQNRREGSSNPTPLINPLAGRASYAEMVAKPANEQSQDFSIPNEDCLALPDSSNKD

Parental  PTSSNDDSKSNLNTSGKTTSSTDGPKFPGDKSSTTQNNNQQKKGIQVLPDGRVTNIPQGMVTDQFGMIGL
          PTSSNDDSKSNLNTSGKTTSS.DGPKFP..KSST.QNNNQQKKG.QVL.DG.V.NIPQGMVTDQFG.IGL
Retrocopy PTSSNDDSKSNLNTSGKTTSSSDGPKFPENKSSTPQNNNQQKKGTQVLLDGQVFNIPQGMVTDQFGIIGL

Parental  LTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQDIDFHVPSEYLTNIHIRDK
          LTFIR.AETDPGM.HLA.G.DLTTLG.N..S.ENLYPKFASPWASSPC.PQDIDFHVP.EYLTNIHIRDK
Retrocopy LTFIREAETDPGMAHLATGRDLTTLGFNMISSENLYPKFASPWASSPCQPQDIDFHVPPEYLTNIHIRDK

Parental  LAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYY
          LA.IK.GRYGEDLLFYLYYMNGGDVLQ.LAAVELFN..WRYHKEERVWITRAPGMEPTMKTNTYERGTYY
Retrocopy LAKIKFGRYGEDLLFYLYYMNGGDVLQHLAAVELFNHGWRYHKEERVWITRAPGMEPTMKTNTYERGTYY

Parental  FFDCLNWRKVAKEFHLEYDKLEERPHLP
          FFDCLNW.KVAKEFHLEYDKLE.RPH.P
Retrocopy FFDCLNWMKVAKEFHLEYDKLEGRPHVP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Sorex araneus was not studied using RNA-Seq expression data.

ChIP-Seq

Sorex araneus was not studied using ChIP-Seq data.

EST

Sorex araneus was not studied using EST data.

TSS

Sorex araneus was not studied using FANTOM5 data.

Lab

retro_sara_751 was not experimentally validated.

Homology

Retrocopy orthology:

Sorex araneus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Sorex araneus	ENSSARG00000001038	1 retrocopy	retro_sara_751 ,
Tarsius syrichta	ENSTSYG00000012927	2 retrocopies	retro_tsyr_1927, retro_tsyr_740,