RetrogeneDB ID:

retro_sara_18

Retrocopy
location
Organism:Shrew (Sorex araneus)
Coordinates:scaffold_231951:74357..75122(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSSARG00000004325
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:PRPS2
Ensembl ID:ENSSARG00000007710
Aliases:None
Description:phosphoribosyl pyrophosphate synthetase 2 [Source:HGNC Symbol;Acc:9465]


Retrocopy-Parental alignment summary:






>retro_sara_18
GACAACCTCATGGAGCTCCTGATCATGATCAACGCCTGCAAGACGGCGTCGGCGCACCGGCTCACGGCCGTCATGCCCTG
CTTCCCGTACGCGCGGCAGGACAAGAAGGACAAGAGCCGGGCCCCCATCTCGGCCAAGCTGGTGGCCAACATGCTGTCCA
TCGCGGGCGCCGACCACATCATCACCATGGACCTGCACGCCTCTCAGATCCAGGGCTTCTTCGACATCCCCGTGGACAAC
CTGTACGCGGAGCCCGCCGTCCTGAAGTGGATCCGGGAGAACATTTCCCAGTGGAGGAACTGCACGGTCGTGTCCCCAGA
TGCGGGGGGCGCTAAGAGGGTCACCTCCATTGCGGACCGCTTGAACGTAGACTTCGCCTTGATCCACAAAGAACGGAAGA
AGGCCAACGAGGTGGATCGCATGGTGCTGGTGGGAGACGTGAAGGACCGGGTGGCCATCCTGGTGGACGACATGGCTGAC
ACCTGCGGCACCATCTGCCACGCCGCCGACAAGCTCGTCTCGGCGGGAGCCACCAAAGTTTATGCCATCCTGACTCACGG
CATCTTCTCGGGCCCGGCCATCACTTGCATCAACAATGCCTGCTTCGAAGCGGTCGTGGTCACCAATACCATCCCTCAGG
AGGATAAGATGAAGCATTGCCCCAAAATACAGGTCATCGACATCTCCATGATCCTGGCCGAAGCCATCAGGAGAACTCAC
AATGGCGAGTCTGTTTCTTACCTGTTCAGCCACGTCCCTTTATAA

ORF - retro_sara_18 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 93.53 %
Parental protein coverage: 61.37 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalDNLMELLIMINACKIASSSRVTAVIPCFPYARQDKKDKSRAPISAKLVANMLSVAGADHIITMDLHASQI
DNLMELLIMINACK.AS..R.TAV.PCFPYARQDKKDKSRAPISAKLVANMLS.AGADHIITMDLHASQI
RetrocopyDNLMELLIMINACKTASAHRLTAVMPCFPYARQDKKDKSRAPISAKLVANMLSIAGADHIITMDLHASQI
ParentalQGFFDIPVDNLYAEPAVLQWIRENISEWRNCIIVSPDAGGAKRVTSIADRLNVEFALIHKERKKANEVDR
QGFFDIPVDNLYAEPAVL.WIRENIS.WRNC..VSPDAGGAKRVTSIADRLNV.FALIHKERKKANEVDR
RetrocopyQGFFDIPVDNLYAEPAVLKWIRENISQWRNCTVVSPDAGGAKRVTSIADRLNVDFALIHKERKKANEVDR
ParentalMVLVGDVKDRVAILVDDMADTCGTICHAAD
MVLVGDVKDRVAILVDDMADTCGTICHAAD
RetrocopyMVLVGDVKDRVAILVDDMADTCGTICHAAD

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide