RetrogeneDB ID:

retro_sara_145

Retrocopy
location
Organism:Shrew (Sorex araneus)
Coordinates:GeneScaffold_4477:619273..619478(+)
Located in intron of:ENSSARG00000009281
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:UBA52
Ensembl ID:ENSSARG00000000984
Aliases:None
Description:ubiquitin A-52 residue ribosomal protein fusion product 1 [Source:HGNC Symbol;Acc:12458]


Retrocopy-Parental alignment summary:






>retro_sara_145
GAAAGCCTCGTGGGGAAGACTGTCGCCCTCGAGGCCACGCCGTCAGAGAGGAGAGGAAAGGCAAAGGCCAGGATCCAGGA
TAAAGAAGGAATTCCTGCCAGCCAGCAAGGGCTGGTCTCTGCTGCCACACAGCGCAAAGATGGGCCGGACAGGGTCTGAC
CACAGGATCCAAAGGAGCCCAGTGCACCTCGTTCTGAGACTCAGG

ORF - retro_sara_145 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 55.71 %
Parental protein coverage: 53.91 %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLSDYNIQKESTLHLVLRLR
..L.GKT..LE..PS......KA.IQDKEGIP..QQ.L..A..Q..D.GRT.SD..IQ..S..HLVLRLR
RetrocopyESLVGKTVALEATPSERRGKAKARIQDKEGIPASQQGLVSAATQRKD>GRTGSDHRIQR-SPVHLVLRLR

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Sorex araneus was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Sorex araneus was not studied using ChIP-Seq data.