RetrogeneDB ID:

retro_pvam_959

Retrocopy
location
Organism:Megabat (Pteropus vampyrus)
Coordinates:scaffold_19205:6518..7032(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:FTL
Ensembl ID:ENSPVAG00000009570
Aliases:None
Description:ferritin, light polypeptide [Source:HGNC Symbol;Acc:3999]


Retrocopy-Parental alignment summary:






>retro_pvam_959
ATGAGTTCTCAAATCTGTCAGAATTATTCCACCGAGGTGGAGGACCCCATCAACCGCTTGGTCGACCTGCATCTGTGGGC
CTCCTACACCTATACCTCTCTCTGGGTTTCTATTTCAACTTCTATGATGTGGCTCTGGAAGGTGTAGGCCATTTCTGCGA
ACTGGCTGAGGAGAAATGAGAGGGCGCAGAGCATCTCTTGAAGATGCAAAACCAGCATGGTGGCTGCACCCTCTTCCAGG
ACTTGCAGAAGCCTTCCTAAGATGAGTGGGATAAAACTCAGGATGCCATGGAAGCCGCCATGGTCATGGAGAAGAACCTG
AACAAGGCCCTTTTGGACCTGGGTTCCGCCCATGCTGGCTCCATCTCTGTGACTTCCCTGAGTGCCACTTCCTAGATGAG
GAGGTGAAACTCATCAAGAAGATAGGCAACCACCTGACTAACCTCCGCAGGCTGGCTGGTCCCCAGGCTGGGCTGGGCCA
GTATGTCTTCGAAAGGCTCACCCTCAAGCTTGAC

ORF - retro_pvam_959 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 69.66 %
Parental protein coverage: 100. %
Number of stop codons detected: 2
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalMSSQIRQNYSTEVEAAVNRLVNLYLRASYTYLSL-GF-YFDRDDVALEGVGHFFRKLAEEKREGAQRLLK
MSSQI.QNYSTEVE...NRLV.L.L.ASYTY.SL.GF.YF...DVALEGVGHF...LAEEK.EGA..LLK
RetrocopyMSSQICQNYSTEVEDPINRLVDLHLWASYTYTSL>GF>YFNFYDVALEGVGHFC-ELAEEK*EGAEHLLK
ParentalMQSQRGGRAVFQDLQKPSQDEWGRTQDAMEAAMIMEKNLNQALLDLHALGSAHADP-HLCDFLETHFLDE
MQ.Q.GG...FQDLQKPS.DEW..TQDAMEAAM.MEKNLN.ALLDL...GSAHA...HLCDF.E.HFLDE
RetrocopyMQNQHGGCTLFQDLQKPS*DEWDKTQDAMEAAMVMEKNLNKALLDL---GSAHAGS<HLCDFPECHFLDE
ParentalEVKLIKKMGDHLTNLRRLACPQAGLGEYLFERLTLKHD
EVKLIKK.G.HLTN.............Y.FERLTLK.D
RetrocopyEVKLIKKIGNHLTNXXXXXXXXXXXXQYVFERLTLKLD

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide