RetrogeneDB ID:

retro_pvam_340

Retrocopy
location
Organism:Megabat (Pteropus vampyrus)
Coordinates:GeneScaffold_2636:301434..301814(+)
Located in intron of:ENSPVAG00000015287
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:EIF4E2
Ensembl ID:ENSPVAG00000007494
Aliases:None
Description:eukaryotic translation initiation factor 4E family member 2 [Source:HGNC Symbol;Acc:3293]


Retrocopy-Parental alignment summary:






>retro_pvam_340
AACAAGTCTGACACACTGAAAGATGATGACAGTGGGAGCTATGATCAGAATGAATGAAATAGCGCACAGAAAGCTAGTAA
GAAGGAAAAAACGGAACGAGACTAGAGTCAGAGCAGCAGCAAGAGGAAGGCTGTTGTCCCTGGACCAGCAGAGCATCCCT
ACACTTTCCGGTCCTCCGGGAGAACCCCCAGCCGTCCCGCTGGCTCACAGAGCTATGAACAGACTATCAAACAGATTGGC
ACCTTTGCCTCTGTGGAGCAGTTCTGGAGGTTTCGCAGCTACATGGTACATCCTAGGGACCTGACAGGCCACAGTGACTC
CCATCTCTTCAAAGAAGGAATTTAAACCCATGTTGGGAGGATGATGCAAATGAAAATGGT

ORF - retro_pvam_340 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 76.52 %
Parental protein coverage: 53.06 %
Number of stop codons detected: 2
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalNKFDALKDDDSGDHDQNEENSTQKDGEKEKMERDKSQSISKRKAVVPGPAEHPLQYNYTFWYSRRTPGRP
NK.D.LKDDDSG..DQNE.NS.QK...KEK.ERD.SQS.SKRKAVVPGPAEHP....YTF..S.RTP.RP
RetrocopyNKSDTLKDDDSGSYDQNE*NSAQKASKKEKTERD*SQSSSKRKAVVPGPAEHP----YTFRSSGRTPSRP
ParentalTSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGI-KPM-WEDDANKNG
..SQSYEQ.IKQIGTFASVEQFWRF.S.MV.P.DLTGHSD.HLFKEGI.KPM.WEDDAN.NG
RetrocopyAGSQSYEQTIKQIGTFASVEQFWRFRSYMVHPRDLTGHSDSHLFKEGI>KPM>WEDDANENG

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Pteropus vampyrus was not studied using RNA-Seq expression data.