RetrogeneDB ID:

retro_pvam_257

Retrocopy
location
Organism:Megabat (Pteropus vampyrus)
Coordinates:GeneScaffold_2203:243101..243511(+)
Located in intron of:ENSPVAG00000010641
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:TIPRL
Ensembl ID:ENSPVAG00000005071
Aliases:None
Description:TIP41, TOR signaling pathway regulator-like (S. cerevisiae) [Source:HGNC Symbol;Acc:30231]


Retrocopy-Parental alignment summary:






>retro_pvam_257
CTCCAGGAGCTTGTCAGCCGTGCGGCTGCACCGATGCAGCAGGCCGTGTAGACACGGACCGTGAAAGCCAGAGGACAAAC
GAGGGTTTTCGAAGAAATTCTCCCGCGTGAGGGCGAACTTCATGATCACGCAGTTTCAAGCCCGAGTGTGAAACTTAGAG
TGATGCCTTCTAGTCCTTTCCTGCCGTTGCAGTTTTTCTGGAGAATGGGTGGAGCGCTGCTGGAGTGAACCGCACGAGAC
TTCACCGCGAGGCTGACGAGGCCCACGTGTCCCAGCAACACACGTCACAAGGGAGAGAAAGGGCTGATTTAATGAGCGTT
GCACCTTCTCTCTTCAGAGAACCCAAAGAACTATCACTTCATTTACGGATAAAGGGGGCAGTTGGTGAGACGCTAATATT
TCCAGAAAGA

ORF - retro_pvam_257 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 50.72 %
Parental protein coverage: 50.37 %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalLGESLKLKVVPTTDHIDTEKLKAREQIKFFEEVLLFEDELHDHGVSSLSVKIRVMPSSFFLLLRFFLRID
L.E.......P......T...KAR.Q...FEE.L..E.ELHDH.VSS.SVK.RVMPSS.FL.L.FF.R..
RetrocopyLQELVSRAAAPMQQAV*TRTVKARGQTRVFEEILPREGELHDHAVSSPSVKLRVMPSSPFLPLQFFWRMG
ParentalGVLIR-MNDTRLYHEADKTYMLREYTSRESKIANLMHVSPSLFTEPNEISQYLPIKETVCEKLIFPER
G.L....N.TRL..EAD........TS.....A.LM.V.PSLF.EP.E.S..L.IK..V.E.LIFPER
RetrocopyGALLE<VNRTRLHREADEAHVSQQHTSQGRERADLMSVAPSLFREPKELSLHLRIKGAVGETLIFPER

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Pteropus vampyrus was not studied using RNA-Seq expression data.