RetrogeneDB ID:

retro_pvam_214

Retrocopy
location
Organism:Megabat (Pteropus vampyrus)
Coordinates:GeneScaffold_1936:144396..144906(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPS4X
Ensembl ID:ENSPVAG00000012882
Aliases:None
Description:ribosomal protein S4, X-linked [Source:HGNC Symbol;Acc:10424]


Retrocopy-Parental alignment summary:






>retro_pvam_214
AATGTCGTCAGCATTGACAGCACCGAAGAGAATTGTTATCTCATCTATGACACCAAAGACCGCTTTGCTTTTTGTCATAT
TACATCTGAGGAAGCCAAGTACAAGTTGTACACAGTGAGAAGGATCTATGGGCACAAAAGGAATCCCTCATCTGGTGAAC
ACAGCTGACCCCAGCTGCTACCCTGATCCCCTCATCGAAGTGAATGACGCCATTCAGGTTGATTGGGAGCTGGCAAGGTT
ACTGATTTCATCAAGGTTGACACTGGTAACCCGTATATGTTTAACCAGAGGTGCTGACCTGGGAAGCCTTGGTGGATCAC
GAACAGAGAGAAACATCCTGGTCCTTTAGATGCGGTTCATGTGAAAGATGCCAAAGGCAACAGCTTTGCCACCCAACTCC
AACATCTTTGTTATCGGCAAAGGCAACAAGCTACGGATTTCTCTTCCCTGAGGAAAAGGGGTCTGCCTCACAGTTGCAAA
AAGAGAGACGGGAGACTGGCTGCCATACAG

ORF - retro_pvam_214 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 57.22 %
Parental protein coverage: 65.78 %
Number of stop codons detected: 0
Number of frameshifts detected 7


Retrocopy - Parental Gene Alignment:

ParentalDVISIDKTGENFRLVYDTKGRFAVHRITTEEAKYKLCKVRKIFVGTK-GIPHLVTHDARTIRYPDPLIKV
.V.SID.T.EN..L.YDTK.RFA...IT.EEAKYKL..VR.I..G.K.GIPHLV...A....YPDPLI.V
RetrocopyNVVSIDSTEENCYLIYDTKDRFAFCHITSEEAKYKLYTVRRIY-GHK>GIPHLV-NTADPSCYPDPLIEV
ParentalNDTIQIDLE-TGKITDFIKFDTGNLCM-VTGGANLGRIG-VITNRERHPGSFDVVHVKDANGNSFATRLS
ND.IQ.D.E..GK.TDFIK.DTGN..M..T.GA.LG..G..ITNRE.HPG..D.VHVKDA.GNSFAT.L.
RetrocopyNDAIQVDWE<AGKVTDFIKVDTGNPYM>LTRGADLGSLG<WITNREKHPGPLDAVHVKDAKGNSFATQLQ
ParentalNI-FVIGKGNKPWISLPRGKG-IRLTIA-EERDKRLAAKQ
.......K........P..KG...LT.A...RD.RLAA.Q
RetrocopyHL<LLSAKATSYGFLFPEEKG<VCLTVA<KKRDGRLAAIQ

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide