RetrogeneDB ID:

retro_pvam_1489

Retrocopy
location
Organism:Megabat (Pteropus vampyrus)
Coordinates:scaffold_9988:30789..31395(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPF1
Ensembl ID:ENSPVAG00000003729
Aliases:None
Description:ribosome production factor 1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:30350]


Retrocopy-Parental alignment summary:






>retro_pvam_1489
CAACAGACTTCTCCCAATATTCTCATCATAACATCAGATAGACCTCATGGGAGAACAGTACGACTCTGTAAACAGCTATC
TACAGTTATACCAAACTCACATATTTATTACAGAAGAGGACTAGCTCAGAAAAAGATTATTTCACAGTGTATTGCCAGAG
ACTTCACAGATCTGATTGTTATTAATGAAGATCATAAAACACCAAATGGATTAATTTTGAGTCACTTACCAAGTGGCCCG
ACTACTTATTTTAAAATGAGTAATGTTTGTCTGTGTAGGAAATTAAGAGGCAAAGACTCCACAGAACACATACCTGAAAT
AATTCTGAATAATTTTACAACACGGTTGGGTCATTCTATTGGACAGATGTTTGCACCTATCTTTCCCAATAATCCTCAAT
TCATTAGAAGGCAGGTTGCCACATTTCACAATCAATGAGATTATACCTTCTTCAGATTTCACAGATACATACTCAAGAGT
GAAAAGAAAGTGGGAATTTAGGAACTTGGACCACATTTTACCTTAAAATTAAGATCTCTTCAGAAAGGAACCTTCGATTC
TAAATATGGAGAACATGAGTGGGTCCATATGCCCCGGGAAGTAGAA

ORF - retro_pvam_1489 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 83.33 %
Parental protein coverage: 58.45 %
Number of stop codons detected: 2
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalRQTSPKILITTSDRPHGRTVRLCEQLSTVIPNSHVYYRRGLALKKIIPQCISRDFTDLIVINEDRKTPNG
.QTSP.ILI.TSDRPHGRTVRLC.QLSTVIPNSH.YYRRGLA.KKII.QCI.RDFTDLIVINED.KTPNG
RetrocopyQQTSPNILIITSDRPHGRTVRLCKQLSTVIPNSHIYYRRGLAQKKIISQCIARDFTDLIVINEDHKTPNG
ParentalLILSHLPSGPTAHFKMSSVRLRKEIKRRGKDPTEHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQ
LILSHLPSGPT..FKMS.V.L......RGKD.TEHIPEIILNNFTTRLGHSIG.MFA..FP.NPQFI.RQ
RetrocopyLILSHLPSGPTTYFKMSNVCLCRKL--RGKDSTEHIPEIILNNFTTRLGHSIGQMFAPIFPNNPQFIRRQ
ParentalVATFHNQRDYIFFRFHRYIFKSEKKVGIQELGPRFTLKLRSLQKGTFDSKYGEYEWVHKPREMD
VATFHNQ.DY.FFRFHRYI.KSEKKVGI.ELGP.FTLKLRSLQKGTFDSKYGE.EWVH.PRE..
RetrocopyVATFHNQ*DYTFFRFHRYILKSEKKVGI*ELGPHFTLKLRSLQKGTFDSKYGEHEWVHMPREVE

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide